A daily digest of 3 articles about biomedical research and tech industry, with an emphasis on bringing data science and AI to life science and medicine.
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31 May 2024
Improving microbial phylogeny with citizen science within a mass-market video game
nature.com/articles/s41587-0…
#CitizenScience
1
2
3
1,360
31 May 2024
Topological benchmarking of algorithms to infer Gene Regulatory Networks from Single-Cell RNA-seq Data
academic.oup.com/bioinformat…
#Bioinformatics
3
13
2,142
31 May 2024
Prediction of tumor origin in cancers of unknown primary origin with cytology-based deep learning
nature.com/articles/s41591-0…
#Bioinformatics
2
8
1,291
31 May 2024
scGHOST: identifying single-cell 3D genome subcompartments
nature.com/articles/s41592-0…
#Bioinformatics
1
3
734
31 May 2024
BISCUIT: an efficient, standards-compliant tool suite for simultaneous genetic and epigenetic inference in bulk and single-cell studies
academic.oup.com/nar/article…
#Bioinformatics
5
20
1,861
22 May 2024
PLMSearch: Protein language model powers accurate and fast sequence search for remote homology
nature.com/articles/s41467-0…
#Bioinformatics
3
8
886
22 May 2024
Inferring gene regulatory networks from single-cell multiome data using atlas-scale external data
nature.com/articles/s41587-0…
#Bioinformatics
2
8
893
22 May 2024
Comprehensive transcriptome analysis reveals altered mRNA splicing and post-transcriptional changes in the aged mouse brain
academic.oup.com/nar/article…
#Bioinformatics
4
14
984
22 May 2024
Accurately clustering biological sequences in linear time by relatedness sorting
nature.com/articles/s41467-0…
#Bioinformatics
2
5
762
22 May 2024
Identification of clinical disease trajectories in neurodegenerative disorders with natural language processing
nature.com/articles/s41591-0…
#NLP
4
12
1,037
22 May 2024
AI-guided pipeline for protein–protein interaction drug discovery identifies a SARS-CoV-2 inhibitor
embopress.org/doi/full/10.10…
#AI
3
9
862
22 May 2024
Leveraging large language models for predictive chemistry
nature.com/articles/s42256-0…
#LLM
336
22 May 2024
Unsupervised ensemble-based phenotyping enhances discoverability of genes related to left-ventricular morphology
nature.com/articles/s42256-0…
#DeepLearning
328
22 May 2024
A comparison of methods for detecting DNA methylation from long-read sequencing of human genomes
genomebiology.biomedcentral.…
#Bioinformatics
3
15
886
22 May 2024
AlphaPept: a modern and open framework for MS-based proteomics
nature.com/articles/s41467-0…
#Bioinformatics
5
12
759
15 May 2024
Genomic language model predicts protein co-regulation and function
nature.com/articles/s41467-0…
#Bioinformatics
9
26
2,352
15 May 2024
Deciphering cell types by integrating scATAC-seq data with genome sequences
nature.com/articles/s43588-0…
#Bioinformatics
8
21
1,876
15 May 2024
SimuCell3D: three-dimensional simulation of tissue mechanics with cell polarization
nature.com/articles/s43588-0…
#Bioinformatics
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687
15 May 2024
PMF-GRN: a variational inference approach to single-cell gene regulatory network inference using probabilistic matrix factorization
genomebiology.biomedcentral.…
#Bioinformatics
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1,953