Identifier mapping project. More about us in bmcbioinformatics.biomedcent…

Joined August 2018
29 Photos and videos
BridgeDb 3.0.23 was released, with improvements for the quality control tool: doi.org/10.5281/zenodo.82213… Full release notes here: github.com/bridgedb/BridgeDb…

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BridgeDb is @bridgedb@fosstodon.org retweeted
new paper: "The FAIR Cookbook - the essential resource for and by FAIR doers" doi.org/10.1038/s41597-023-0…
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RT @egonw@scholar.social Fwd: "BridgeDb NWO grant update #6: second hackathon" chem-bla-ics.blogspot.com/20… bridgedb #hackathon #bridgeDbNWO scholar.social/@egonw/109845…
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during the #bridgedbnwo hackathon today we release a new BridgeDb DataSources release, new BridgeDb Docker images, and a new BridgeDb Java release :)
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today the 2nd NWO Open Science grant hackathon starts (until tomorrow lunchtime): github.com/bridgedb/nwo-hack… (ping @egonw@akademienl.social if you want to participate)
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Our webserver was down yesterday, for unclear reasons. Apologies for the inconvenience. We took the opportunity to load the latest Gene/Protein identifier mapping databases released earlier this month, see bridgedb.github.io/data/gene…
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RT @egonw@scholar.social Blog: "BridgeDb NWO grant update #5: BioHackathon, Webservice, Bioregistry " chem-bla-ics.blogspot.com/20… scholar.social/@egonw/109493…
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RT @egonw@akademienl.social I just added the first article (partly) funded with our NWO ISAAC browser plugin, one with 19 authors, in about 2 minutes. The browser plugin is a real time saver! chrome.google.com/webstore/d… Just give it a DOI and off it goes. akademienl.social/@egonw/109…
RT @egonw@scholar.social it's been a bit silent on the bridgedb NWO Open Science grant front. Holiday, and a lot of teaching in Sept/Oct. But our team continued working on upgrading the BridgeDb Webservice code. Today I saw some really nice new results, basically (1/2)
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reflecting the hard part is done. We see here the new JSON response to an API call! scholar.social/@egonw/109349… (2/2)
RT @egonw@scholar.social we are getting better at tracking outdated identifiers. I just added a bunch of no-longer existing #wikidata identifiers to bridgedb Tiwid, huge thanks to Tooba and Denise (and cthoyt for setting up the GitHub Action to make the plot automatically (1/2)
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BridgeDb is cited. Check this paper what their story is about identifier mapping
2 Nov 2022
Just published in JOSS: 'MSMetaEnhancer: A Python package for mass spectra metadata annotation' doi.org/10.21105/joss.04494
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BridgeDb is @bridgedb@fosstodon.org retweeted
Did you miss the @NWONieuws #OpenScience in Practice webinar on interoperable #openresearch with @egonwillighagen, @jambelien and Sander de Ridder? The recording is now available: nwo.nl/en/open-science-pract…

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it looks like we have DNS problems with our website. Likely solve tomorrow. Ping @egonwillighagen if you need specific info from the website, and he'll try to help
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we received some reports that suggested that the BridgeDb Webservice was slow in responding. We just rebooted the service. Plz let us know if you continue to experience issues.