Asst Professor of Ecology (Ecosystems & Animals) @UFBiology | Postdoc @UF Biology/Anthropology | PhD @yale_eeb

Joined May 2018
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What in the world just happened? Why were all the fish dead? Here’s a short thread as to how our latest paper, the last of my PhD at @yale_eeb, came to be by starting at the beginning.
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I'm a Dutton. The other half of my family is Franklin, as in Ben. @paramountplus drops three hit shows about my "dynasty" and suddenly Google emails me every 20 minutes about suspicious logins. Friends, I run a microbiome lab @UF. There is no ranch. 😁 @UF_CLAS @UFBiology
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👀....what an opportunity! usajobs.gov/job/870869600

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Christopher L Dutton retweeted
For years you needed UMIs and similar dark molecular biology magic to get perfect amplicon sequences from @nanopore . With recent accuracy improvements really clever algorithms that is now changed. Savont unlocks ASVs from low coverage amplicons 🤯🤯🤯 biorxiv.org/content/10.64898…

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Christopher L Dutton retweeted
Two (!) Assistant Professor positions now open at @lunduniversity in #Sweden! If you are a quantitative-minded and computationally interested biologist, consider to join me and my colleagues at the Department of Biology. Note: short deadline: May 25! lu.varbi.com/en/what:job/job…
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Christopher L Dutton retweeted
After 7 years at Cambridge, EMBL, & ETHZ building applying computational tools for microbiome science, I'm pivoting to industry. Available Oct 2026 for senior comp-bio roles in Switzerland 🇨🇭 Open to agtech, microbial biotech, AI-for-biology. Portfolio👉franciscozorrilla.github.io
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Our weather station was taken out by a controlled burn, right after a flood destroyed our water quality meter. The Mara River ecosystem in Kenya is studying us now. Pic by @1geemipaul
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Christopher L Dutton retweeted
Officially out - very excited to share! “Emergent simplicity” in microbial ecosystems has long been an appealing idea—but meant different things to different people. As a result, the field hasn't agreed: is it real? surprising? useful? 1/3 doi.org/10.1126/science.adr1…
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Two new papers from our group this month! A collaboration across the @ChrisLDutton & @AmandaSubalusky labs at @UF, Frauendorf lab @colgateuniv, Grupstra lab @FloridaAtlantic, and Post lab @Yale ...on how large wildlife reshape ecosystems 🦛🌊🧵 @UF_CLAS @UFBiology @africa_uf
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Big picture: large animals don't just move nutrients... they move microbes and restructure food webs from the bottom up. As megafauna decline, we're losing ecosystem functions we've barely begun to describe.
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Huge thanks to all the co-authors of these two monumental efforts! Funded by @NSF
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Christopher L Dutton retweeted
Have you ever wondered why children starting nursery pick up so many germs? I certainly did, and with a crack team of parent-scientists/clinicians, we set out to answer that question. Is childcare a germ factory or an immune bootcamp? journals.asm.org/doi/10.1128…
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Christopher L Dutton retweeted

Simulated lab worlds straight from pixels. We scan the lab scene with depth cameras and reconstruct the environment. Each object already has a high-quality mesh in our object library from our mesh scanning system. A localization pipeline places those meshes into a shared coordinate frame, creating a digital version of the lab. This works well for science automation because the environment is constrained: the set of objects is limited, we have accurate models of them, and we don’t need to solve the full open-world perception problem. With this digital lab in place we can: • Drive safe motion planning around real geometry • Track state changes by re-localizing mesh parts (e.g. a lid opening) • Attach objects to the robot when picked so the planner accounts for them and avoids collisions built by @BastotdeHeijden @BlerimAbdullai @TahirMello
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