Interested in #genomics #bioinformatics #plants #metabolism
Joined July 2020
- Tweets 8,003
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- Followers 1,269
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314 Photos and videos
Jan 24
FrustraMPNN: tool for proteome-scale analysis of deep mutational single-residue local energetic frustration in proteins
doi.org/10.64898/2026.01.22.…
NAVIP: Unraveling the Influence of Neighboring Small Sequence Variants on Functional Impact Prediction
doi.org/10.1101/596718
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Jan 24
JanusX: an integrated and high-performance platform for scalable genome-wide association studies and genomic selection
doi.org/10.64898/2026.01.20.…
Genomic characterization of a nematode tolerance locus in sugar beet
doi.org/10.1101/2023.06.22.5…
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Jan 24
Rare shell colours in bivalves reveal multiple evolutionary pathways to blue and green colouration
doi.org/10.64898/2026.01.21.…
Out of the blue: Family-wide loss of anthocyanin biosynthesis in Cucurbitaceae
doi.org/10.1101/2025.10.06.6…
#Evolution #Genomics
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Jan 23
FastSpeciesTree: Fast and Scalable Species tree Inference
doi.org/10.64898/2026.01.20.…
Out of the blue: Family-wide loss of anthocyanin biosynthesis in Cucurbitaceae
doi.org/10.1101/2025.10.06.6…
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Jan 23
Phased genome assembly reveals post-allopolyploidization subgenomic diversification of tobacco centromeres
doi.org/10.64898/2026.01.19.…
Genome sequence and RNA-seq analysis reveal genetic basis of flower coloration in the giant water lily Victoria cruziana
doi.org/10.1101/2024.06.15.5…
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Jan 23
Pangenome Analysis of Pyrus Reveals Potential Role of Transcription Factors in Recent Adaptation to Arid Environments
doi.org/10.64898/2026.01.20.…
Pangenome of cultivated beet and crop wild relatives reveals parental relationships of a tetraploid wild beet
doi.org/10.1101/2023.06.28.5…
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Jan 22
On the correctness of gene tree tagging and the consistency of ASTRAL-pro under a unified model of gene duplication, loss, and coalescence
doi.org/10.64898/2026.01.20.…
DupyliCate - mining, classifying, and characterizing gene duplications
doi.org/10.1101/2025.10.10.6…
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Jan 20
Pangenome analysis reveals the evolutionary dynamics of repeat-based holocentromeres
doi.org/10.64898/2026.01.17.…
Pangenome of cultivated beet and crop wild relatives reveals parental relationships of a tetraploid wild beet
doi.org/10.1101/2023.06.28.5…
#Genomics #Bioinformatics
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Jan 17
A drought stress-induced MYB transcription factor regulates pavement cell shape in leaves of European aspen (Populus tremula)
doi.org/10.64898/2026.01.16.…
Automatic identification and annotation of MYB gene family members in plants
doi.org/10.1101/2021.10.16.4…
#PlantSci
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GenomeMining retweeted
Evolutionary dynamics of the proanthocyanidin biosynthesis gene LAR
doi.org/10.1186/s12864-025-1…
#Evolution #FlavonoidBiosynthesis #PlantSciences #Bioinformatics #Genomics #SciComm #OpenScience
ALT Evolutionary dynamics of the proanthocyanidin biosynthesis gene LAR https://doi.org/10.1186/s12864-025-12429-5
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Jan 15
Conservation of non-consensus nucleotides in transcription factor binding sites
doi.org/10.64898/2025.12.07.…
Automatic identification and annotation of MYB gene family members in plants
doi.org/10.1101/2021.10.16.4…
#TranscriptionFactors #GeneExpression
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Jan 15
Sweet signals: Using floral traits to predict nectar sugar availability
doi.org/10.64898/2026.01.14.…
Genome sequence of the ornamental plant Digitalis purpurea reveals the molecular basis of flower color and morphology variation
doi.org/10.1101/2024.02.14.5…
#Genomics #Evolution #Ecology
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Jan 15
Arabidopsis TITAN LIKE is required for U12-type intron splicing, especially for AT–AC subtypes
doi.org/10.1101/2025.02.25.6…
Animal, fungi, and plant genome sequences harbour different non-canonical splice sites
doi.org/10.1101/616565
#Genomics #Bioinformatics
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GenomeMining retweeted
21 Dec 2025
Long-read sequencing is rewriting plant genomics! 🌱 With Oxford Nanopore & PacBio tech, even huge, complex genomes can be assembled faster and with higher quality. This paper explores progress, challenges, and what’s next 🚀🔬 doi.org/10.1017/qpb.2021.18 #Genomics #PlantScience
ALT Long-read sequencing is rewriting plant genomics! 🌱 With Oxford Nanopore & PacBio tech, even huge, complex genomes can be assembled faster and with higher quality. This paper explores progress, challenges, and what’s next 🚀🔬 https://doi.org/10.1017/qpb.2021.18 #Genomics #PlantScience
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Jan 11
HapBridge: A Methylation-Guided Approach for Correcting Switch Errors and Bridging Phased Blocks in Long-Read Phasing
doi.org/10.1101/2025.11.07.6…
Cookbook for Plant Genome Sequences
doi.org/10.20944/preprints20…
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GenomeMining retweeted
The molecular basis of the binding and specific activation of rhizobial NodD by flavonoids | Science science.org/doi/10.1126/scie…
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GenomeMining retweeted
ROTIS: A RUBY-assisted one-shot tissue-culture-free system for in-planta soybean transformation from germinated seedlings (Yongguang Li , Ke Lu , Shunli Feng , Ran Ning , Haiyan Li , Xue Zhao , Yubing He , Yingpeng Han) doi.org/10.1093/plphys/kiaf6… @ASPB #PlantSci
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Jan 10
Genome-wide & stress-responsive landscape of the Pectin methylesterase gene family in cucumber & muskmelon
doi.org/10.64898/2026.01.08.…
Large-scale Phylogenomics Reveals Systematic Loss of Anthocyanin Biosynthesis Genes at the Family Level in Cucurbitaceae
doi.org/10.1101/2025.10.06.6…
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Jan 10
RT @agristok: Two PhD Positions in Plant Pathology at Kiel University (CAU), Germany – Start March 2026: agristok.net/2026/01/08/phd-… via @agris…
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