(she/her) Project Scientist - HHMI Janelia Campus. Views are my own.
Joined June 2013
- Tweets 523
- Following 457
- Followers 1,088
- Likes 4,740
35 Photos and videos
Aubrey Weigel retweeted
5 Feb 2025
📢 Submissions are now open for the CellMap Segmentation Challenge.
Build the best method for segmenting cellular organelles in vEM using our 289 annotated volumes, 40 organelle classes, and 22 diverse cell and tissue types.
🔗 janelia.org/news/the-competi…
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Aubrey Weigel retweeted
18 Oct 2024
🚨 Exciting update for the CellMap Segmentation Challenge! 🚀Launch is now slated for early November 2024! Learn more about the new timeline and what’s ahead here👉mailchi.mp/janelia.hhmi.org/…
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4 Oct 2024
We’re thrilled to announce the launch of the CellMap Segmentation Challenge set to go live at the end of October 2024!
Sign up for email announcements and be the first to know when the challenge officially launches: cellmapchallenge.janelia.org
4 Oct 2024
⭐ Join the CellMap Segmentation Challenge! ⭐
Compete to create the next, best #AI-driven image segmentation model using hundreds of our meticulously annotated high-resolution EM images as training data.
Competition starts end of Oct. Sign up today ➡️ cellmapchallenge.janelia.org…
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Aubrey Weigel retweeted
9 Sep 2024
🚨 Exciting news! 🚨
Check out this data release of 7⃣ FIB-SEM and segmentation volumes from a single P7 mouse as a preprint on bioRxiv 🐁🎉
👉biorxiv.org/content/10.1101/…
@avweigel @BogovicJohn @korfffly @preibischs @MountainRhoades @yurii_zubov
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7 Aug 2024
Excited to announce the release of our DaCapo paper!
@MountainRhoades @janfunkey @cmalinmayor @diane_adjavon @neptunes5thmoon @yurii_zubov
👇🏼Check it out! 👇🏼
7 Aug 2024
DaCapo paper is out!
DaCapo is a specialized deep learning library designed to accelerate the training and application of machine learning techniques on large, near-isotropic image data.
arxiv.org/abs/2408.02834
#MachineLearning #DeepLearning #Segmentation #OpenSource #DaCapo
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5 Apr 2024
🥳 submit an abstract now! 🤩
5 Apr 2024
From Images to Knowledge (I2K) is going down @humantechnopole in Milan, Italy, from October 23-25 2024. 🗓️
🚨Abstract and Workshop submission now OPEN 🚨
forms.gle/E2McVjKU1sAsF97Q9
Invited speakers will soon be announced, but most talks will be selected from your🫵 abstracts!!! 📃
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8 Feb 2024
Interested in doing awesome science at an amazing place with a really cool dude? Check these opportunities out! 🤩
8 Feb 2024
🚨 2 open jobs in the @jug_lab - apply now!🚨
👉 Data Scientist and Research Software Engineer in Computer Vision and AI - careers.humantechnopole.it/o…
👉 Machine Learning Specialist in Computer Vision and Bioimage Analysis - careers.humantechnopole.it/o…
What's the difference? A short 🧵
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Aubrey Weigel retweeted
27 Oct 2023
😱📣 Scie[Twitter|X]: I NEED YOUR HELP!!! 🙏
All of you who ever liked a lecture of mine...
All of you who liked one of the courses I teach in...
All of you I work(ed) with in one way or another...
All of you who see my desperation! 😜
PLEASE retweet! 🙏 careers.humantechnopole.it/o…
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Aubrey Weigel retweeted
5 Oct 2023
Interested in developing molecular tools @HHMIJanelia? Positions available in my lab (hhmi.wd1.myworkdayjobs.com/e…), please reach out via email if interested!
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6 Oct 2023
Great opportunity!
5 Oct 2023
🚨 Job Alert 🚨
At @humantechnopole we are looking for a Bioimage Analyst (careers.humantechnopole.it/o…) and a Research Software Engineer (careers.humantechnopole.it/o…)
Join our young and talented team. Our mission is to help others do the right thing... (a short 🧵) 1/4
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Aubrey Weigel retweeted
6 Dec 2022
Today's the day! Come to my poster during the 1.45pm session to talk about a novel ER-desmosome-keratin complex. Made possible by our amazing collaborators @AICjanelia, @avweigel and @COSEMdata, and Wayne Vogl!
2 Dec 2022
I'll be attending my first ever ASCB #CellBio2022 meeting! If you'd like to chat about #desmosomes and #KeratinFilaments, and their surprising relationship with the #EndoplasmicReticulum, come over to poster P2924 on Tuesday, Dec 6th!
ALT A 3d reconstruction of a desmosome, keratin filaments, and the endoplasmic reticulum from a FIB-SEM dataset.
ALT Screenshot of my poster information.
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Aubrey Weigel retweeted
5 Dec 2022
Join us tomorrow Tue 10:00 AM Room 151A at our #CellBio @ASCB @EMBO session "New Opportunities in Imaging Data Analysis & Integration" with
Jan Ellenberg @EllenbergLab @tlemberger @priscaliberali @avweigel @preibischs Maria Polychronidou @molsystbiol 🧵
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1 Dec 2022
Check out the ✨NEW✨ content on OpenOrganelle!
Update includes:
📰A News page
🦠An updated Organelles page
🔍A new backend for dataset metadata which is now stored in a queryable PostgreSQL database
openorganelle.janelia.org
ALT Screen shot of new home page featuring News reel and latest datasets
ALT Screenshot of News and Announcements page including thumbnails of each blog post
ALT Screenshot of newly updated Organelles page. A thumbnail gallery of EM images for organelles such as centrosomes, mitochondria, nucleus, etc.
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Aubrey Weigel retweeted
4 Nov 2022
🚨 We are hiring a Bioimage Analyst and Research Software Engineer @humantechnopole in Milan. 🚨
I believe we are a really fun team doing great work together. Check us out and apply if you want to join! 👍
We’re looking forward getting to know you!
careers.humantechnopole.it/o…
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1 Nov 2022
Explore the segmentations (@CellMapPT) of this dataset jrc_macrophage-2, EM volume (Hess Lab and C. Shan Xu) and more on @OpenOrganelle
openorganelle.janelia.org.
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1 Nov 2022
Super cool rendering 😍 by @philiphubbard up on Janelia's YouTube channel: youtu.be/3hVHbIRS48Q
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1 Nov 2022
Explore the segmentations (@CellMapPT) of this dataset jrc_hela-3, EM volume (Hess Lab and C. Shan Xu) and more on @OpenOrganelle openorganelle.janelia.org.
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