Group leader at UNSW Sydney π¦. Single cell biologist, open source developer, diversity aficionado, rock climber, and Nella's papa π
Joined June 2018
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8 Photos and videos
Pinned Tweet
20 Nov 2023
igraph preprint:
arxiv.org/abs/2311.10260
17 yrs of open source network analysis for all π¦
Many, many thanks to all contributors and co-authors. It's a blast devving with you folks πππ
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20 Nov 2023
and also btw our paper in collab with the Einav lab on severe dengue progression in children is on Nature Immunology's website now nature.com/articles/s41590-0β¦
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20 Nov 2023
btw atlasapprox.org/ is live. Single-cell, whole-body cell atlases across the tree of life at your fingertips.
Finally get marker genes for the cell type you dig in 1.2 seconds: "What are 10 markers of AT2 in human lung?"
Powered by our awesome atlas approximations.
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13 Apr 2023
Proud to receive a CZI #SingleCell data insight grant to build light and scalable approximations of cell atlases! Standardized, easy & fast (subsecond) access to atlas data across cell types, organs & organisms, free & open source, to anyone in the π! atlasapprox.readthedocs.io/
13 Apr 2023
Scientists are using existing #SingleCell data to uncover new insights into health disease.
Meet some of the researchers who are developing new computational tools & methods to process, analyze and understand this valuable data ππΏππ½ππ» czi.co/3K1mtJ4
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17 Dec 2022
Proud to share our latest work with the @EinavShirit lab shedding π¦ on severe dengue with single cell resolution! π¬π»π§¬π¦ π¦ Those virus-harbouring B cells are just crazy... Well done everyone!! πΎπ₯
biorxiv.org/content/10.1101/β¦
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18 Dec 2022
In the same patients, cell substype and cell state abundances are altered in an intriguing way: almost no non-classical monocytes are found, while atypical immunoregulatory twins of killer NK and T cells emerge and likely flood the system with the wrong cytokines.
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18 Dec 2022
This study is a clean example that scientific disciplines have no meaning anymore: data science, molecular biology, immunology, and medicine are all facets of the same disco ball we call research πͺ©πΊ
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17 Nov 2022
Heyo! We have an open position for a PhD student in computational biology for a super exciting project on "Evolutionary machine learning with cell atlases". Single cell data compression machine learning models informed by evolution Python fuπ§¬π»π₯ fabilab.org
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Fabio Zanini retweeted
20 Oct 2022
We obviously will no longer ask our editors to evaluate submissions for their suitability for eLife prior to peer review, as "suitable for eLife" no longer means anything.
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23 Mar 2022
theguardian.com/lifeandstyle⦠yes dengue infects white people too, dear funding agencies. Turns out viruses are less racist than ourselves
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10 Mar 2022
Please retweet π: Looking for a mixed computational/experimental PhD student in single cell biomedicine on neonatal lung disease and bluebottle jellyfish π¬β¨οΈ - lab website fabilab.org - email me CV, motivation letter, and a coding sample. Oh and Nella is here ππ
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23 Aug 2021
The Australian Research Council (ARC), which funds virtually all non-medical research in Oz, decided that citing a preprint in a funding application disqualifies it. ππ Minister: preprints are essential tools of modern science! Sign here: docs.google.com/forms/d/e/1Fβ¦
15 Apr 2021
Looking for a postdoc in single cell data science, esp. on cancer and induced stem cells, co-advised with John Pimanda here in sunny Sydney. β¨οΈππ If you think every cell should have a voice and are a proficient Python or R coder, shoot me an email: fabilab.org (1/2)
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15 Apr 2021
Members of underrepresented groups in data science are particularly welcome to apply, including: Aboriginals and Torres Strait Islanders, people of colour, LGBTQ community members, and yes - women are still underrepresented, until we change that (2/2) π¦π.
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9 Mar 2021
Open position: PhD student in single cell computational biology (Sydney)
We are looking for a passionate PhD candidate to establish a standard model of cell biology based on single cell transcriptomics data. Network analysis data science πβ¨οΈπ
Info at fabilab.org/pages/jointhelabβ¦
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25 Jan 2021
Invasion day, on which a bunch of Europeans on a ship decided Country was for them to "conquer". As a recent European immigrant, I am baffled this is a day of celebration, just imagine how it must feel for our Aboriginal friends and colleagues... π β
Fabio Zanini retweeted
7 Jan 2021
You know you need some #goodnews today! Join us to recognize outstanding research parasites & symbionts today at 4pm Eastern/3pm Central: youtube.com/c/CaseyGreene/liβ¦
@GreeneScientist @thebyrdlab @fabiousername @Kelley__Harris
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