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Javier Santoyo@jsantoyo
31 Aug 2025
Direct Inference of Haplotypes from Sequencing Data. #Haplotypes #SequencingData #Bioinformatics #Genomics academic.oup.com/bioinformat…
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23
2,002
Javier Santoyo@jsantoyo
9 Aug 2025
Targeted decontamination of sequencing data with CLEAN. #SequencingData #DataDecontamination #NARgenomicsAndBioinformatics #Bioinformatics #Genomics academic.oup.com/nargab/arti…
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2,511
Javier Santoyo@jsantoyo
25 Jul 2025
Evaluation of sequencing reads at scale using rdeval. #SequencingData #ReadsSummary #Bioinformatics academic.oup.com/bioinformat…
11
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2,625
EMBL-EBI Training@EBItraining
6 Jun 2025
Join us for our annual genome #bioinformatics training course, which will provide a guide to the technology, analysis workflows, tools, and resources for next generation #sequencingdata analysis. Hosted at @emblebi Applications close on 17 August 2025 ebi.ac.uk/training/events/ge…
Course at EMBL-EBI. Genome bioinformatics: from short- to long-read sequencing. 17 – 21 November 2025. Hinxton, UK.

ALT Course at EMBL-EBI. Genome bioinformatics: from short- to long-read sequencing. 17 – 21 November 2025. Hinxton, UK.

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Javier Santoyo@jsantoyo
1 Sep 2024
Disentangling Cobionts and Contamination in Long-Read Genomic Data using Sequence Composition. #LongRead #SequencingData #ContaminationFiltering #G3 @darwintreelife academic.oup.com/g3journal/a…

Disentangling cobionts and contamination in long-read genomic data using sequence composition

Samples collected for genomic sequencing often contain genetic material from several organisms. Determining if a given sequence represents contamination ca

academic.oup.com
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491
Javier Santoyo@jsantoyo
25 Jun 2024
Next-generation data filtering in the genomics era. #NGS #SequencingData #DataFiltering #Genomics @NatureRevGenet nature.com/articles/s41576-0…

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24
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6,463
Javier Santoyo@jsantoyo
23 May 2024
iSeq: An integrated tool to fetch public sequencing data. #SequencingData #DataDownload @biorxivpreprint biorxiv.org/content/10.1101/…
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22,310
SIBTraining@SIBTraining
29 Apr 2024
📢 Submitting, Finding and Downloading Raw Sequencing Data with ENA 👉 07 June 2024 💻 Streamed Trainer: @geertvangeest #bioinformatics #training @isbsib #FAIR #ENA #ReproducibleResearch #SequencingData 🚨 Apply at sib.swiss/training/course/20…

Submitting, Finding and Downloading Raw Sequencing Data with ENA

Overview Making research data FAIR (Findable, Accessible, Interoperable, Reusable) is an essential step during scientific publication. Raw sequencing

sib.swiss
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Javier Santoyo@jsantoyo
28 Apr 2024
COSAP: Comparative Sequencing Analysis Platform. #SequencingData #AnalysisTools @BMCBioinfo bmcbioinformatics.biomedcent…

COSAP: Comparative Sequencing Analysis Platform

BMC Bioinformatics - Recent improvements in sequencing technologies enabled detailed profiling of genomic features. These technologies mostly rely on short reads which are merged and compared to...

link.springer.com
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1,875
CABANAnet@CabanaNET
22 Feb 2024
This past 5th to 9th from February, we had the workshop: Analysis of high throughput sequencing data for plant pathogen identification and analysis, held at Universidad Nacional Toribio Rodríguez de Mendoza de Amazonas, Chachapoyas. #SequencingData #datascience #pathogens
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Javier Santoyo@jsantoyo
4 Dec 2023
Streamlining remote nanopore data access with slow5curl. @nanopore #SequencingData #DataSharing @biorxivpreprint biorxiv.org/content/10.1101/…

Streamlining remote nanopore data access with slow5curl

As adoption of nanopore sequencing technology continues to advance, the need to maintain large volumes of raw current signal data for reanalysis with updated algorithms is a growing challenge. Here...

biorxiv.org
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533
HKU Centre for PanorOmic Sciences (CPOS)@hkucpos
27 Oct 2023
Contact us today to learn more about our NGS service and how we can help you achieve your research goals. 🧬 #CPOS #NGSservice #fastturnaroundtime #researchers #sequencingdata #genomics #science #research #innovation #technology #DNA #RNA #targetedsequencing
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HKU Centre for PanorOmic Sciences (CPOS)@hkucpos
11 Sep 2023
Unleash the Power of NGS Services at CPOS #CPOS #NGSservice #fastturnaroundtime #researchers #sequencingdata #genomics #science #research #innovation #technology #DNA #RNA #targetedsequencing #highquality #results #expertteam #contactus #qualityservice
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Nanalyze
@nanalyzetweets
25 Jun 2023
PacBio $PACB is working with Google on #AI tools to unlock more insights from #SequencingData but not necessarily relying on the software to do the heavy lifting. nanalyze.com/2023/05/buy-pac…

Should You Buy Pacific Biosciences Stock Now? - Nanalyze

Pacific Biosciences stock is again on the rise, as the company promises to enter a golden age of growth. Should investors buy this story?

nanalyze.com
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Javier Santoyo@jsantoyo
4 Jun 2023
A survey of mapping algorithms in the long-reads era. #LongReads #SequencingData #ReadMapping @GenomeBiology genomebiology.biomedcentral.…
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3,127
Javier Santoyo@jsantoyo
3 Jun 2023
WAGS: User-friendly, rapid, containerized pipelines for processing, variant discovery, and annotation of short read whole genome sequencing data. #VariantAnalysis #ShortReads #SequencingData #AnimalGenomics #Bioinformatics #G3 academic.oup.com/g3journal/a…

Whole Animal Genome Sequencing: user-friendly, rapid, containerized pipelines for processing,...

Abstract. Advancements in massively parallel short-read sequencing technologies and the associated decreasing costs have led to large and diverse variant d

academic.oup.com
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6,324
Javier Santoyo@jsantoyo
3 Jun 2023
IndepthPathway: an integrated tool for in-depth pathway enrichment analysis based on single cell sequencing data. #PathwayEnrichment #SingleCell #SequencingData #Bioinformatics academic.oup.com/bioinformat…

IndepthPathway: an integrated tool for in-depth pathway enrichment analysis based on single-cell...

AbstractMotivation. Single-cell sequencing enables exploring the pathways and processes of cells, and cell populations. However, there is a paucity of path

academic.oup.com
7
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2,750
Javier Santoyo@jsantoyo
3 Jun 2023
Cellenium—a scalable and interactive visual analytics app for exploring multimodal single-cell data. #SingleCell #SequencingData #InteractiveAnalysis #Bioinformatics academic.oup.com/bioinformat…

Cellenium—a scalable and interactive visual analytics app for exploring multimodal single-cell data

AbstractSummary. Multimodal single-cell sequencing data provide detailed views into the molecular biology of cells. To allow for interactive analyses of su

academic.oup.com
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1,219
SoyBase.org@SoyBaseDatabase
23 Mar 2023
NCGR Virtual #Metagenomics #workshop April 17 - 21, 2023 Learn how to use the UNIX command line, analytical workflows & public tools to independently analyze #SequencingData plus how to visualize & render data using graphing tools. sites.google.com/ncgr.org/20…
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Javier Santoyo@jsantoyo
17 Dec 2022
CONGA: Copy number variation genotyping in ancient genomes and low-coverage sequencing data. #CNV #AncientGenomes #LowCoverage #SequencingData #Bioinformatics @PLOSCompBiol journals.plos.org/ploscompbi…

CONGA: Copy number variation genotyping in ancient genomes and low-coverage sequencing data

Author summary In parallel with developments in genomic technologies over the last decades, ancient genomics opened a new era in understanding the evolutionary history of populations and species....

journals.plos.org
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