4 Aug 2024
Hi-C heat maps getting the better of me this morning. Feeling like I need to upgrade my whole pipeline to pairtools Higlass and include tracks for every data type possible, even a gene annotation set! ๐ฎโ๐จ
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23 Apr 2024
pairtools v1.1.0 is out!
23 Apr 2024
Pairtools v1.1.0 is out on github and PyPI and will soon be released on bioconda!
This release fixes a few major bugs introduced into sort and dedup in recent versions and thus is highly recommended for upgrading!
Full release notes:
github.com/open2c/pairtools/โฆ
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23 Apr 2024
Pairtools v1.1.0 is out on github and PyPI and will soon be released on bioconda!
This release fixes a few major bugs introduced into sort and dedup in recent versions and thus is highly recommended for upgrading!
Full release notes:
github.com/open2c/pairtools/โฆ
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1 Mar 2024
1/ ๐งฌNot one, but **four** Open2C packages have been accepted as @NumFOCUS #affiliated projects!!! ๐
#cooler #cooltools #pairtools and #bioframe
We are proud to join the #NumFOCUS family and we look forward to working with the vibrant #scientific #opensource community!
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22 Sep 2023
We at @Open2C_team are looking for a journal for two of our manuscripts on software tools for Hi-C data analysis: pairtools (biorxiv.org/content/10.1101/โฆ) and cooltools (biorxiv.org/content/10.1101/โฆ)!
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7 Jun 2023
You can use pairtools to produce .pairs, I think juicer tools support that format for input github.com/open2c/pairtools
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16 Feb 2023
also please check this tweetorial by @Phlya describing recent innovations in Pairtools:
15 Feb 2023
Happy to have contributed to the manuscript describing pairtools, the fundamental toolbox needed for analysis of #3DGenome 3C data, in particular for conversion of mapped reads to interpretable contacts! Third preprint by @Open2C_team and it's always a pleasure to work together.
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16 Feb 2023
Pairtools manuscript is out! This software for Hi-C data processing has been around for a while, but now it really got second life under @agalitzina leadership. Another example of excellent teamwork by @Open2C_team !
15 Feb 2023
If you work with #3Dgenome 3C data (Hi-C, Micro-C, ...), check out pairtools (biorxiv.org/content/10.1101/โฆ)!
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15 Feb 2023
Special shout-out for this preprint goes to @agalitzina, who spearheaded the writing of the manuscript, not to mention a huge amount of work on the very core of pairtools recently.
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15 Feb 2023
Happy to have contributed to the manuscript describing pairtools, the fundamental toolbox needed for analysis of #3DGenome 3C data, in particular for conversion of mapped reads to interpretable contacts! Third preprint by @Open2C_team and it's always a pleasure to work together.
15 Feb 2023
If you work with #3Dgenome 3C data (Hi-C, Micro-C, ...), check out pairtools (biorxiv.org/content/10.1101/โฆ)!
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15 Feb 2023
See documentation at pairtools.readthedocs.io/ or pipe your data through our pairtools-powered pipeline distiller github.com/open2c/distiller-โฆ. Feedback, questions, and pull requests welcome!
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15 Feb 2023
If you work with #3Dgenome 3C data (Hi-C, Micro-C, ...), check out pairtools (biorxiv.org/content/10.1101/โฆ)!
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15 Feb 2023
Pairtools: from sequencing data to chromosome contacts biorxiv.org/cgi/content/shorโฆ #bioRxiv
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15 Aug 2019
pairtools stats saves required info to look at this, btw, just need to plot it
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27 Sep 2016
PairTools is the only plugin that's ever worked properly in my experience.
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