Open data linkage, visualization and sharing for genomic epidemiology and phylogeography @thecgps @bdi_oxford Funded by Wellcome & Li Ka Shing foundation.
Joined May 2015
- Tweets 125
- Following 204
- Followers 1,239
- Likes 123
22 Photos and videos
27 Dec 2021
Thanks for reporting - Normal service resumed - might have been too much turkey - thanks for bearing with us :-)
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Microreact retweeted
8 Apr 2021
great to see @myMicroreact being utilised to interpret epi-linked sequence data @NorwichResearch, @NNUH, @NHSuk, @CovidGenomicsUK, and @PHE_uk
26 Mar 2021
Since COVID-19 hit the UK in March, we've been at the forefront of genomic sequencing – sequencing over 18,000 samples.
Our new photo essay explores the collective effort of the Quadram, @NorwichResearch, @NNUH, @NHSuk, @CovidGenomicsUK, and @PHE_uk: ow.ly/vVBx50E95GE
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11 Feb 2021
RoomRater Microreact edition: cheery flowers, newly minted genomic epi', but cat has been staring at @mymicroreact trees for too long - 10/10 @KCMellor
11 Feb 2021
Celebrating #InternationalWomenInScienceDay #WFH with fine feline company. Proud to have finished my genomic epi PhD during lockdown and to be working with the awesome @pneumowatch team #WellcomeGenomeWomen @sangerinstitute
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20 Jan 2021
Genomics of SARS-CoV-2 in The Philippines - Great to see Microreact use for delivering insight as part of @geco_phl @inezmedado @RITMPH
We've also made a @MyMicroreact project to take a look at what we know about #SARSCoV2 in the #Philippines so far (using all the shared GISAID and NCBI genomes). Take a look! microreact.org/project/4hz5H…
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19 Jan 2021
Great to see Microreact making an appearance in this important announcement @TheCGPS @bdi_oxford
19 Jan 2021
We’re pleased to announce a donation of £100 million from @INEOS to establish the new INEOS Oxford Institute, helping us to combat one of the world’s greatest healthcare challenges - antimicrobial resistance >> ox.ac.uk/news/2021-01-19-100…
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20 Aug 2020
we are chuffed to see @jacindaarden lecturing @ESRNewZealand on SARS-CoV-2 lineages with Microreact ;-)
20 Aug 2020
Prime Minister @jacindaardern made a surprise visit to ESR today to say thanks for the hard work and long hours our staff have put in during the COVID-19 pandemic. She was fascinated by how we are helping to understand the latest outbreak through genome sequencing
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Microreact retweeted
4 Jul 2020
Excited to share 1st preprint from our lab! Genomic analysis of clinical Campylobacter strains from Chile led by Veronica Bravo tinyurl.com/y7wr4fsf Great collaboration with @narjol1 and Lorena Porte, Thomas Weitzel @Clinicaalemana! @MyMicroreact link microreact.org/project/VbEQs…
4 Jul 2020
Genomic analysis of the diversity, antimicrobial resistance and virulence potential of Campylobacter jejuni and Campylobacter coli strains from a private health care center in Central Chile biorxiv.org/cgi/content/shor… #bioRxiv
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18 Jun 2020
Thank you for flagging @sciolato We had the team work tirelessly to sort out and here you go. This project also shows another new(ish) feature of being able to use emoji's as icons, and also linking directly to a Google Sheet. #OneLessKiwiproblem Aroha!
microreact.org/project/5eNVe…
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18 Jun 2020
and here's the link to the Google spreadsheet that sits behind the Microreact docs.google.com/spreadsheets…
18 Jun 2020
NEW TREE VIEWER UPDATE: All projects now feature a vastly enhanced tree viewer (phylocanvas) that scales to 100s of thousands of leaves - here's a data linked tree of global SARS-CoV-2 genomes via the @CovidGenomicsUK Check out your projects. microreact.org/project/cogco…
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18 Jun 2020
thats a 39904 leaf tree - we'd love to see much much bigger!
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Microreact retweeted
18 Jun 2020
UPDATE: 22,218 SARS-CoV-2 @CovidGenomicsUK seen here within the global tree (n=33,904). Much improved tree viewer in @MyMicroreact along with global (pangolin) lineage distribution. Mammoth effort from across the UK sequencing and analysis centres microreact.org/project/cogco…
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Microreact retweeted
15 Jun 2020
SeqCOVID Spain @MyMicroreact podemos ver la distribución de muestras y linajes en el tiempo y el espacio de los genomas generados en el consorcio.
microreact.org/project/SiIqq…
seqcovid.csic.es/microreact/
Brought to You by Your Friendly Neighborhood @GaloGoig with help from @leosanbu
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5 Jun 2020
Good show on the Microreact pies @Justin_OGrady :-) !
5 Jun 2020
Scotland has a slightly different virus! Dr Justin O’Grady at the Quadram Institute (they are 1 of 16 uk labs sequencing #coronavirus genomes from 1000s of sick patients...)...the UK is WORLD-LEADING in this research....@TheQuadram
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16 May 2020
Incredible collective effort from 16 sequencing centres across the UK to aid our ongoing understanding of COVID-19 View the Microreact here : microreact.org/project/cogco… @CovidGenomicsUK
🧬 The total number of #COVID19 sequences now released is 16,380.
The sequences and analysis are freely available to view 👉 cogconsortium.uk/data
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Microreact retweeted
12 May 2020
Our trees are on @MyMicroreact for you to play with:
microreact.org/project/Campy…
microreact.org/project/Campy…
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Microreact retweeted
27 Apr 2020
10k #SARS_COV_2 genomes- incredible work by an incredible, well supported scientific collaboration cogconsortium.uk/about/, and rapid data sharing of course. Analysis of the UK strains: microreact.org/project/COGco… @MyMicroreact
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Microreact retweeted
27 Apr 2020
And if you are interested in exploring the current analysis of worldwide lineages circulating in the UK, here is some analysis of ~9000 UK genomes divided into lineages via @TheCGPS fantastic @MyMicroreact website:
microreact.org/project/COGco…
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