A community effort to collect a curated set of analysis pipelines built using Nextflow. Mastodon: @nf_core@mstdn.science
Joined February 2018
- Tweets 2,113
- Following 13
- Followers 4,121
- Likes 1,288
267 Photos and videos
The @nf_core paper is out in @NatureBiotech ! 🍾 nature.com/articles/s41587-0… 📖🤓 Read about how the @nf_core framework provides community-curated @nextflowio bioinformatics pipelines, ready for use across any institute or research facility ✨🧬🧫🖥️ (1/5)
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nf-core retweeted
And shortly after that, TaxProfiler, the @nf_core #metagenomics pipeline had a new major release: 2.0, adding multiple cool new classifiers (metacache, sylph and melon)! Great work by Sofia, Lili, @jfy133 and others! github.com/nf-core/taxprofil…
So cool to hear my colleagues mentioned on my fav podcast 😎
The #MicroBinfie Podcast on tools for host DNA removal mentions the massive contributions from Sofia Stamouli, Lili Andersson-Li & others (incl Lauri Mesilaakso) on the #TaxProfiler pipeline 👇
soundcloud.com/microbinfie/1…
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nf-core retweeted
Apr 29
Day 2 of @nextflowio training and the @nf_core community hackathon is underway! After a fantastic first day of learning and collaborating, we're back and ready to build. #NextflowSummit
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nf-core retweeted
Apr 28
A fantastic end to day 1 of the @nf_core hackathon! Great to see progress across projects including cellpainting, sarek parabricks integration, dragen pipeline initiation, and crispr!🤩Looking forward to more updates and progress tomorrow! 👏
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nf-core retweeted
Apr 28
The @nf_core Hackathon has officially kicked off here in Boston! 🎉 Whether you're an experienced Nextflow developer or just getting started, this is where great pipelines and even better connections are made. Time to build something amazing together! #NextflowSummit
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nf-core retweeted
Apr 28
Less than 1 hour to go until the community @nf_core hackathon begins here in Boston!🍏The team are ready to go.
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Pipeline release! nf-core/rnafusion v3.0.1b - 3.0.1b!
Please see the changelog: github.com/nf-core/rnafusion…
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Pipeline release! nf-core/rnafusion v3.0.1b - 3.0.1b!
Please see the changelog: github.com/nf-core/rnafusion…
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Pipeline release! nf-core/pixelator v2.2.0 - nf-core/pixelator 2.2.0!
Please see the changelog: github.com/nf-core/pixelator…
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Pipeline release! nf-core/pixelator v2.1.0 - nf-core/pixelator 2.1.0!
Please see the changelog: github.com/nf-core/pixelator…
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Pipeline release! nf-core/pixelator v2.0.0 - nf-core/pixelator 2.0.0!
Please see the changelog: github.com/nf-core/pixelator…
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Pipeline release! nf-core/oncoanalyser v2.0.0 - 2.0.0 - Flame Robin!
Please see the changelog: github.com/nf-core/oncoanaly…
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Pipeline release! nf-core/scnanoseq v1.1.0 - nf-core/scnanoseq v1.1.0 - Iron Alligator!
Please see the changelog: github.com/nf-core/scnanoseq…
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nf-core weekly help desk is coming to Asia Pacific!
After the success of the European and American time zones, help desk is coming to Asia Pacific starting Wednesday, March 12.
Join this week's hosts, @awgymer and @Chris_Hakk, and discuss all things Nextflow & nf-core.
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Bring along anything you are working on and meet others in the Asia Pacific Nextflow and nf-core community.
For more information and links, see the nf-core blog post:
nf-co.re/blog/2025/apac-help…
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Pipeline release! nf-core/demultiplex v1.6.0 - 1.6.0!
Please see the changelog: github.com/nf-core/demultipl…
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Pipeline release! nf-core/sarek v3.5.1 - 3.5.1 - Akkatjåkkå!
Please see the changelog: github.com/nf-core/sarek/rel…
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nf-core retweeted
30 Jan 2025
I thought I'd post it first, but Sara beat me to it...
We have published SAMURAI, a reproducible pipeline to analyze data from shallow whole-genome sequencing experiments, leveraging the great @nf_core framework and @nextflowio.
academic.oup.com/bib/article…
30 Jan 2025
SAMURAI, our CNA detection pipeline for shallow WGS, is now published in @BriefingBioinfo! 🎉
My first first-author publication! Check out our work here ⤵️
academic.oup.com/bib/article…
#bioinformatics #CNA #WGS
@LabRomualdi @gstarwind
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Pipeline release! nf-core/nanostring v1.3.1 - v1.3.1 - 2025-01-20 - Micrometre patch!
Please see the changelog: github.com/nf-core/nanostrin…
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