Research team led by Raffaello Potestio at the University of Trento, Italy. Multi-scale modelling, computational biophysics, statistical mechanics, and pizza.
Joined November 2016
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154 Photos and videos
24 Mar 2025
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11 Mar 2025
Biophysics, Stat Mech and Machine Learning will meet in Trento from July 7th to 11th, 2025 in our StatPhys29 Satellite Workshop "Molecular biophysics at the transition state: from statistical mechanics to AI": indico.ectstar.eu/event/252/.
Co-organized with @ai_ngrosso.
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18 Feb 2025
š„³ We are pleased to announce the publication of our paper āDensity of States in Neural Networks: An In-Depth Exploration of Learning in Parameter Spaceā in Trans. on Machine Learning Research.
openreview.net/forum?id=BLDtā¦
@MeleMargherita_ @ai_ngrosso @UniTrento @INFN_ @DondersInst
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18 Feb 2025
Our findings provide a detailed characterization of the density of states across network configurations, shedding light on the interplay between data structure, network architecture, and class imbalance.
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18 Feb 2025
This research is the result of a collaborative effort among the teams at the University of Trento, INFN-TIFPA, and the Donders Institute, and we are grateful for the support of our colleagues and institutions.
#MachineLearning #DeepLearning #NeuralNetworks #StatPhysics
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7 Jan 2025
š¢š„³ PAPER ALERT! š„³š¢
We are happy to advertise the publication on JPCB of the paper āA Multiscale Analysis of the CzrA Transcription Repressor Highlights the Allosteric Changes Induced by Metal Ion Bindingā, by M. Rigoli, R. Potestio and R. Menichetti.
pubs.acs.org/doi/full/10.102ā¦
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7 Jan 2025
The MEOW approach, implemented in the EXCOGITO software suite, attributes to atoms and residues a relevance score based on their dynamical and energetic properties, and allows one to rationalise their functional behaviour.
pubs.acs.org/doi/full/10.102ā¦
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The method, which is based on concepts from coarse-graining theory, allowed us to make better sense of the allosteric mechanism of CzrA through a novel, intrinsically multi-body analysis of plain MD simulations.
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4 Dec 2024
Our PhD student Camilla Spreti @Camilla_Spreti just gave a talk at the yearly PhD Workshop of the Physics Dept. of the University of Trento @UniTrento, illustrating her research on enhanced sampling of small stat mech systems.
Excellent job! š„³
ppw2024.physics.unitn.it/homā¦
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22 Nov 2024
š¢š¢š¢ Paper alert! š¢š¢š¢
Our latest effort is out!
"Molecular Dynamics Characterization of the Free and Encapsidated RNA2 of CCMV with the oxRNA Model", by G. Mattiotti,Ā M. Micheloni,Ā L. Petrolli,Ā L. Rovigatti,Ā L. Tubiana,Ā S. Pasquali,Ā R. Potestio
onlinelibrary.wiley.com/doi/ā¦
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22 Nov 2024
The role of the N-terminal tails of the CCMV subunits is also highlighted as a critical feature in the construction of a proper electrostatic model of the CCMV capsid.
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22 Nov 2024
This work proposes a novel protocol for the in silico study of complex, relevant, and fascinating systems such as RNA viruses, and discusses the potential and the challenges inherent in multi-scale modelling of RNA molecules.
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12 Nov 2024
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12 Nov 2024
For a PhD student, choosing a good lab is 10 times more important than choosing a particular topic to study
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