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Sinan U. Umu @sinanugur
Joined April 2009
  • Tweets 320
  • Following 273
  • Followers 128
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Sinan U. Umu@sinanugur
25 Apr 2025
Easydecon: A Lightweight Workflow for Cell Type Analysis in High-Definition Spatial Transcriptomics Assays biorxiv.org/content/10.1101/…

Easydecon: A Lightweight Workflow for Cell Type Analysis in High-Definition Spatial Transcriptomics...

Spatial transcriptomics enables mapping gene expression within tissue structures. The VisiumHD platform by 10x Genomics advances this further, offering near-single-cell resolution across tissue...

biorxiv.org
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Prof. Nikolai Slavov
@slavov_n
2 Sep 2025
A gene may template many dozens of products. Its products can have diverse, even opposing functions. Ascribing the functions of the products to the gene is a simplistic approximation that has outlived its usefulness.
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Cool abstract
Cell@CellCellPress
27 Jul 2025
In the latest issue! Neuropeptides specify and reprogram division of labor in the leafcutter ant Atta cephalotes dlvr.it/TM8GVY
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Oded Rechavi
@OdedRechavi
10 Apr 2025
Supplementary figure 16
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Oded Rechavi
@OdedRechavi
7 Dec 2024
Abstract Vs. Results
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Jake Wintermute 🧬/acc
@SynBio1
4 Dec 2024
"Activation of NF-κB pathway in DCs via TLR4 signaling upregulates pro-inflammatory TNF-α, IL-6, and IL-1β, which enhances Th17 differentiation through IL-23R engagement while inflammasome activation drives IL-18 secretion and recruits neutrophils..."
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Jonathan Eisen
@phylogenomics
25 Nov 2024
No I do not want to fill out another doodle poll covering 20 days
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lcamtuf@lcamtuf
21 Nov 2024
Life pro tip: you can draw any line you want through a scatter plot, they're not checking this
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Sinan U. Umu retweeted
goosewin
@Goosewin
12 Nov 2024
python ecosystem is a dumpster fire
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We thank to the reviewers for their useful comments.
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There is a new #Snakemake tutorial that complements the general tutorial by specifically introducing how to use #Snakemake for plotting and interactive reporting, including how to combine #Snakemake with #Datavzrd: snakemake.readthedocs.io/en/…

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Welcome to bioinformatics.
Programmer Humor
@PR0GRAMMERHUM0R
23 Oct 2024
thereIsNothingWeCanDo redd.it/1g9n624
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MicroRNAs are back.
The Nobel Prize
@NobelPrize
7 Oct 2024
BREAKING NEWS The 2024 #NobelPrize in Physiology or Medicine has been awarded to Victor Ambros and Gary Ruvkun for the discovery of microRNA and its role in post-transcriptional gene regulation.
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Oded Rechavi
@OdedRechavi
3 Oct 2024
Connecting to a Microsoft Teams call
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The new version of @MirGeneDB 3.0 is out! Great to be part of this work. You access the preprint now and soon available on NAR.
This tweet is unavailable
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Programmer Humor
@PR0GRAMMERHUM0R
1 Sep 2024
timeHasChanged reddit.com/r/programmerhumor…
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Concerning.
Elisabeth Bik@MicrobiomDigest
26 Aug 2024
AI can be used to make convincing looking fake data. There is no way we can distinguish real from fake anymore. It is safe to assume that genAI has already resulted in many fake papers. Scientific publishing is not prepared for this.
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Reading grant application reviewers comments:
Oded Rechavi
@OdedRechavi
19 Jul 2024
We thank the reviewers for their helpful suggestion
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Oded Rechavi
@OdedRechavi
19 Jul 2024
We thank the reviewers for their helpful suggestion
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Programmer Humor
@PR0GRAMMERHUM0R
22 May 2024
tenOutOfTenDentistsRecommend reddit.com/r/programmerhumor…
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