Joined May 2020
- Tweets 204
- Following 16
- Followers 182
- Likes 32
2 Photos and videos
Pinned Tweet
3 Jul 2020
We have a new feature of webFlaGs.se! Now possible to submit a single sequence or accession. Homologues are automatically found with BLASTP against the RefSeq db and used as FlaGs input.
Previous users might have to refresh to clear the cache & see the new input page
2
4
14
18 Sep 2024
We had an issue with webFlaGs and uORF4u jobs getting stuck in the input validation step, but should be working fine now
2
1
512
WebFlaGs retweeted
13 May 2024
We are looking for a new PhD student to join us on our adventures in computational sequence and structural analyses of bacteriophage proteins atkinson-lab.com/phd-positio…
You will be part of the new and exciting @scilifelab DDLS research school
1
74
89
18,003
11 Apr 2024
Please use this link to access webflags at the moment server.atkinson-lab.com/webf… Something up with the forwarding for the .se domain
2
1
530
10 Mar 2024
We're aware of some issue this weekend causing FlaGs to fail. Looking into it...
1
1
588
10 Mar 2024
The problem seems to be that we can't access @ncbi ftp.ncbi.nih.gov/ from Lund University servers
1,222
WebFlaGs retweeted
19 Dec 2023
An interactive visualization of conserved gene neighborhoods now on corewiki.uni-goettingen.de/ (#SubtiWiki's next version)! It features clusters created with @webflags1 . Big thanks to Tom Nowak for his work and @gem__atkinson for the great FlaGs tool! @IMPRS_GS #bacillus #MOTY
ALT Gene neighborhoods of rnpM across different organisms.
3
20
65
6,739
21 Nov 2023
Looks like the @NCBI protein database is a bit wobbly this morning. webFlaGs might be slow and/or submissions might fail.
2
428
Hello! LU-Fold now has an X presence! We are a Lund University facility for high throughput protein complex structure prediction. Follow for updates and click here for more info and request support atkinson-lab.com/lu-fold/
3
5
1,936
13 Sep 2023
That’s great to hear, thank you for the update!
Thank you for the report. We are working on the problem and hope to have it resolved soon. Sorry for the inconvenience and thank you for your patience! If you have questions, please contact our Help Desk at info@ncbi.nlm.nih.gov.
3
342
13 Sep 2023
We're having more slow and failed jobs than usual today due to getting a lot of the dreaded Bad Gateway errors for @NCBI searches. Hoping it's 'just one of those days'...
1
1
1
851
17 Jul 2023
Just a heads up that there's currently an @NCBI bug affecting FlaGs: some valid RefSeq accessions are not associated with their corresponding assembly IDs in the Identical Protein Group (IPG) data. I'm in contact with the lovely people at NCBI Support and hoping for a fix soon 🤞
3
2
6
1,912
19 Apr 2023
We now have representative seq blastp integrated into the new webFlaGs submission form made by @art_egorov, and it feels time to redirect webflags.se there! The classic page is still currently accessible at classic.webflags.se
1
2
6
984
23 Mar 2023
If you have problems reaching the classic submission page today, try our new one instead server.atkinson-lab.com/webf…
1
110
WebFlaGs retweeted
23 Mar 2023
Here we go! A network of toxin-antitoxins, AlphaFold-modelling of thousands of complexes, experimentally validation, and discoveries about TA neutralisation and relationships to phage defence systems on the way biorxiv.org/content/10.1101/… @Lundsuni @medfak_LU @KAWstiftelsen
4
47
155
28,384
7 Mar 2023
The old webFlaGS submission system is getting through a queue after a crash. No better time to try our new server: server.atkinson-lab.com/webf…
1
3
195
20 Feb 2023
We're testing a new webFlaGs submission page and more stable queueing system made by PhD student @art_egorov. Give it a try and let us know what you think! server.atkinson-lab.com/webf…
3
4
940
WebFlaGs retweeted
24 Jan 2023
Excited to announce that through @art_egorov's hard work we have a server version of uORF4u for uORF/leader peptide prediction server.atkinson-lab.com/uorf…
Artyom has also made a home page for the Atkinson lab tools, including his MSA4u alignment visualiser
server.atkinson-lab.com/
2
7
16
3,629