Bioinformatics Lab - Department of Computer Science - University of Freiburg - bioinf.uni-freiburg.de/impre…
Joined January 2017
- Tweets 243
- Following 99
- Followers 401
- Likes 341
6 Photos and videos
backofenlab retweeted
20 Sep 2021
Day #2 of the #DFG SPP2002 conference in Kiel. 🙂This morning @Lydia_LH17 from our group will present our joint Z-project with @BackofenLab on ribosome profiling and bioinformatics approaches for global sORF identification.
18 Sep 2021
Looking forward to our @SPP__2002 conference (@dfg_public) on small proteins in prokaryotes starting tomorrow in Kiel: Opening lecture by the @storzlab tomorrow evening & many talks on new insights in small proteins in bacteria & archaea & their function in the upcoming days.
2
5
backofenlab retweeted
18 Jun 2021
We're delighted to share our new work on CRISPR-Cas. CRISPRloci: comprehensive and accurate annotation of CRISPR–Cas systems academic.oup.com/nar/advance…
1
11
14
backofenlab retweeted
15 Jun 2021
Exciting news, our preprint about predicting #ORF in bacteria from #Ribo-seq data is available. Great collab: @realgelhausr, @SarahLSvensson, @amri2k, @SharmaLab1, @eggtron, @BackofenLab
biorxiv.org/content/10.1101/…
github.com/RickGelhausen/Rib…
#proteins #benchmark #Bioinformatics #SPP2002
5
7
6 May 2021
Are you interested in developing an online data analysis game in the context of @StreetScienceCo? This student position is for you, apply now! #streetscience #CitizenScience #OpenScience
ALT Backofen lab - Galaxy Team - Street Science Community - We're hiring! HIWI (40H/month). To help us implementing an online data analysis game. We offer an exciting topic in a great team. You will improve your GitHub, Galaxy and JavaScript skills and also your knowledge about microbiome! Interested applicants should send their CV to berenice.batut@gmail.com and muellert@informatik.uni-freiburg.de
15
13
backofenlab retweeted
6 Mar 2021
A new #usegalaxy tool suite from @BackofenLab for chimeric RNAs associated with specific cancer types. ChiRA: an integrated framework for chimeric read analysis from RNA-RNA interactome and RNA structurome data doi.org/10.1093/gigascience/…
8
13
backofenlab retweeted
19 Feb 2021
And thanks to the organizers! First and foremost @hexylena and @shiltemann! What a great event!
19 Feb 2021
A long week and it's sadly coming to an end. We're so happy for the (now 1177 people🤯) who registered and those who joined this week! Thank you to @CinecaProject @ErasmusplusNL @gxytraining @galaxyproject, and all the amazing GTN instructors who supported this #UseGalaxy event!
6
19
backofenlab retweeted
19 Feb 2021
@denbiOffice and RBC Freiburg @BackofenLab will also support the next @galaxyproject Papercuts CoFest #usegalaxy #Bioinformatics. For more information see: denbi.de/training/1194-the-f…
5
6
backofenlab retweeted
14 Feb 2021
We welcome our 1080 registered trainees! Don't hesitate to ask any of the 50 trainers from all over the world.
galaxyproject.eu/posts/2021/…
@ELIXIREurope @EoscLife #denbi @UniFreiburg @Gallantries_EU
5
15
backofenlab retweeted
16 Feb 2021
🦠Don't miss out on the next #COVID19 Galaxy webinar with @bjoerngruening @babi2305 and Wolfgang Maier
With them, you will explore the Viral Beacon and Galaxy variant workflows
➡️bit.ly/GalaxyCOVID19
@CRGenomica @galaxyproject @denbiOffice @usegalaxyp #usegalaxy @UniFreiburg
7
8
backofenlab retweeted
10 Feb 2021
To all biologists: what are your favourite online conferences you will attend this year?
3
5
backofenlab retweeted
10 Feb 2021
Today @sergeilkp will talk about "Insights from selection analysis of complete genomes and read-level data". Join us and learn more about the genetics of #SARSCoV2.
@ELIXIREurope #denbi #usegalaxy
9 Feb 2021
🚨 Haven't you attended yet one of your Galaxy-#COVID19 webinars this year? Now it's time to. We are ready for session 4 with Sergei Pond, tomorrow at 5 pm CET!
Are you coming? ➡️ bit.ly/galaxycovid_4
#bioinforamtics #ELIXIRvsCOVID19 #usegalaxy
4
4
22 Dec 2020
Heartfelt congratulations to @MiladMiladi_ for successfully defending his PhD thesis last friday. He published an amazing number of papers, 12 of them with a major contribution! Check out his work here: orcid.org/0000-0002-0173-300… #bioinformatics #COVID19 #bioconda #RNA #usegalaxy
4
7
24
backofenlab retweeted
10 Dec 2020
We're very happy to share our new work on CRISPR-Cas. CRISPRidentify: identification of CRISPR arrays using machine learning approach. academic.oup.com/nar/advance… A data-driven approach that uses ML to detect and differentiate true arrays from false ones based on several features.
1
6
12
backofenlab retweeted
24 Nov 2020
We're pleased to share our new work on CRISPR-Cas.Casboundary: Automated definition of integral Cas cassettes academic.oup.com/bioinformat… the first method for automated cassette boundary detection, Cas protein annotation and classification, which comprise single and multi-modules.
4
7
16
backofenlab retweeted
20 Oct 2020
NanoGalaxy: Nanopore long-read sequencing data analysis in Galaxy. Our work on bridging @nanopore and @galaxyproject, the two accessibility heavens of sequencing & data analysis, is now published: doi.org/10.1093/gigascience/… @WanderingWim @shiltemann @bjoerngruening @mariusvdbeek
30
81
backofenlab retweeted
6 Nov 2020
Our tool is online now. You are welcome to try it. Please tell us what do you think about it and also we would appreciate seeing your feedback to improve the tool.
6 Nov 2020
CRISPRIdentify: Identification of CRISPR arrays using machine learning approach biorxiv.org/cgi/content/shor… #bioRxiv
1
7
10
backofenlab retweeted
21 Jun 2020
We're pleased to share our new work on CRISPR-Cas. The CRISPRcasIdentifier clearly outperforms all other available tools on the most recent and comprehensive CRISPR-Cas classification dataset(F-score of 0.91) academic.oup.com/gigascience…
1
12
28
backofenlab retweeted
7 May 2020
@ProjectJupyter notebooks running in #usegalaxy and analysing the result of the 3k #SARSCoV2 workflow. @rstudio is also available of course :)
Thanks @nekrut for presenting and @DBlankenberg for his awesome work in Interactive Tools.
2
5
11