Open-source bioinformatics libraries in Python
Joined March 2009
- Tweets 837
- Following 47
- Followers 4,433
- Likes 20
6 Photos and videos
22 Dec 2023
We're following the OBF lead and not using Twitter anymore, see open-bio.org/2023/11/20/leav…
And Biopython 1.82 has just been released, see open-bio.org/2023/12/22/biop…
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22 Dec 2023
We don't have a dedicated Mastodon account, for now keep an eye on genomic.social/@OpenBio and #Biopython
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18 Nov 2022
Way overdue, but Biopython 1.80 is out pypi.org/project/biopython/1… - expect formal announcement later mailman.open-bio.org/piperma… - conda packages soon too! Thank you to all the contributors /Peter
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Biopython Project retweeted
12 Jul 2022
Just ordered a pair of free 2FA keys courtesy Google Open Source Security Team for use with PyPI where a few of my projects are now deemed “critical” (plus @Biopython) pypi.org/security-key-giveaw…
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Biopython Project retweeted
10 May 2022
55 lines of #Python code to build a Multiple Sequence Alignment viewer for the terminal with the #Rich library (from @textualizeio) #bioinformatics
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#Biopython can handle #snapgene file! Using this feature, it's possible to easily convert many snapgene files into #genbank format files!!
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8 Dec 2020
NumPy has dropped Python 3.6 support, Biopython plans to soon. Any objections? github.com/biopython/biopyth… mailman.open-bio.org/piperma…
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Biopython Project retweeted
10 Nov 2020
Our #Python bug hunt in popular, well-maintained projects (@TensorFlow, numpy, salt, sentry and @Biopython) turned up interesting stuff like undefined var reference, unreachable code, and more.
blog.sonarsource.com/sonarcl…
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Biopython Project retweeted
16 Sep 2020
Very happy to have my first contribution to @Biopython merged today! Hope to contribute more in the future. Shoutout to @pjacock for the patience in reviewing my PR.
#opensource #python #bioinformatics
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4 Sep 2020
Biopython 1.78 has been released open-bio.org/2020/09/04/biop… - please note the Bio.Alphabet removal biopython.org/wiki/Alphabet
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Biopython Project retweeted
29 Jul 2020
No more Bio.Alphabet in Biopython 1.78, we’re collecting some examples of changes needed here:github.com/biopython/biopyth…
Are we missing your use case?
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29 Jul 2020
Read or listen to the “Biopython Project Update 2020” 5 minute talk given at #BCC2020 #BOSC2020 f1000research.com/slides/9-7… bcc2020.sched.com/event/coLV…
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Biopython Project retweeted
26 Jul 2020
Great work by all the volunteers, I'm glad I was able to contribute, it was fun and I ended up learning a lot. 🎉🎉
25 Jul 2020
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22 Jul 2020
We have several people already active on Biopython projects at the #BCC2020 CoFest - with pull requests merged and issues closed. Thank you - and please join us! bcc2020.github.io/cofest/
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23 Jun 2020
Biopython 1.77 is belatedly up on conda-forge anaconda.org/conda-forge/bio… - the glitch holding up the package update turned out to be frustratingly simple in the end. Enjoy! /Peter
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Biopython Project retweeted
28 May 2020
Technical discussions are hard; a few tips
gael-varoquaux.info/programm…
Some thoughts and advice on better communications in technical projects, in particular open source
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25 May 2020
Biopython 1.77 is now out open-bio.org/2020/05/25/biop… - available from PyPI for “pip install --upgrade biopython”
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Biopython Project retweeted
24 Mar 2020
New #Jupyter Notebook tutorial for @Biopython - illustrates some simple #bioinformatics analysis to characterise small sequences like a #coronavirus genome github.com/chris-rands/biopy…
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Biopython Project retweeted
20 Dec 2019
New upload: python-biopython 1.76 dfsg-1 by Michael R. Crusoe into unstable... deb.li/i7CPG
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