@CytoExploreR is an R package developed by @DillonHammill for interactive cytometry data analysis.
Joined February 2020
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15 Photos and videos
19 Apr 2021
Version 1.1.0 of @CytoExploreR is now available for download. This update doesn't include any major changes, but instead provides some important bug fixes. All users should install this update, which doesn't require any updates to cytoverse dependencies. dillonhammill.github.io/Cyto…
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26 Jun 2020
Time to have your say! The next version of @CytoExploreR will likely come with a new default colourblind-friendly colour palette with improved contrast. See the demonstration and any feedback is welcome: github.com/DillonHammill/Cyt… #cytometry
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19 Jun 2020
Ever wished you could could know where your population was BEFORE gating? Now cyto_plot can colour points based on expression of a third parameter. Look how easy it to locate the CD8 T Cells in this ungated data! Gating will never be the same! #openscience #cytometry
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20 Jun 2020
Did you know that @CytoExploreR now has support for any dimensionality reduction algorithm through cyto_map()? Simply pass the name of the function to the type argument. Time to get mapping! #openscience #cytometry github.com/DillonHammill/Cyt…
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19 Jun 2020
Time to reward those who take the time to appropriately label their samples. cyto_names_parse() will split filenames by a delimiter and add these as experimental variables in cyto_details(). You can also do this automatically in cyto_setup by setting parse = TRUE. #openscience
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19 Jun 2020
Here is how to do this in cyto_setup, either set parse_names = TRUE or supply the delimiter.
19 Jun 2020
Did you know that now you can import cytometry data analyzed on other platforms into @CytoExploreR using the CytoML package? See the website to find out how: rglab.github.io/CytoML/. Once imported you can create a @CytoExploreR gatingTemplate using cyto_gatingTemplate_generate().
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19 Jun 2020
Not only that, but it is immediately obvious where our dead cells are located! We can validate this by colouring the points based on uptake of our live dead dye (red). This forward gating approach will save you a lot of time!
19 Jun 2020
Version 1.0.8 is available now! This is a major update that includes important bug fixes, speed improvements and new features. Docker images will be available soon. Check out the changelog for more details: dillonhammill.github.io/Cyto… #openscience #cytometry
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23 Apr 2020
Version 1.0.7 is out now! FIt-SNE has been updated to version 1.2.1 to use PCA initialization by default. Versioned docker images are now available and FIt-SNE comes pre-configured! cyto_map() demo has been posted on GitHub: github.com/DillonHammill/Cyt… #cytometry #openscience
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9 Apr 2020
Version 1.0.6 is out now! This update brings improvements to customizing plot layouts and margins. It is now easy to create complex multiplot layouts in @CytoExploreR! Feature demo available at github.com/DillonHammill/Cyt… #cytometry #openscience
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8 Apr 2020
@CytoExploreR now has support for more sophisticated plot layouts! See demonstration here: github.com/DillonHammill/Cyt… #cytometry #openscience
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30 Mar 2020
Time to bring Excel-like data editing features to CytoExploreR! Version 1.0.5 is out now. All data menus and editors have been updated to simplify the user experience and ease the transition from GUI-oriented software. #cytometry #openscience
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23 Mar 2020
CytoExploreR v1.0.4 is out now. A couple of bug fixes. A #docker image of CytoExploreR is now available! Now you can run CytoExploreR locally in a web browser without having to install anything! Gating is also now supported in the RStudio graphics device. #openscience #cytometry
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23 Mar 2020
CytoExploreR Docker setup instructions can be found here: github.com/DillonHammill/Cyt…
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17 Mar 2020
Did you know that manual gating is fully supported in @CytoExloreR? All of your favourite gate types are supported, including rectangles, ellipses, polygons and quadrants. It has never been easier to draw gates around populations! #openscience #cytometry
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16 Mar 2020
Now is the perfect time to update your cytometry data analysis skills. The express installation instructions for Windows have been updated github.com/DillonHammill/Cyt…. Installation instructions for mac OS will be added shortly. Video demonstrations are coming soon!
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17 Mar 2020
Installation instructions have just been updated for mac OS github.com/DillonHammill/Cyt….