Paper2Agent brings research papers ‘to life.’ This open tool from @Stanford transforms static papers into interactive AI assistants that can explain and apply their methods. It builds on the MCP and works in 2 layers: - Paper2MCP: Extracts the paper’s methods and code into an MCP server. - Agent layer: Links the MCP server to a chat agents. The result is a real conversational assistant for the paper. ▪️ Paper2Agent has already worked impressively for agents that use AlphaGenome, Scanpy, and TISSUE tools. Here are the details 🧵

AlEx 2025 on March 18 was a resounding success. A huge thank you to all participants, speakers, and volunteers for making this event enriching and inspiring. Your enthusiasm drives the spirit of scientific exploration. @BiophysicalSoc @iiserkol #Biophysics #studentchapter

Don’t miss *AlEx 2025*, March 18, 2025 , Organized by Team Gāṅgeya,@GangeyaChapter the Student Chapter of Eastern India. Join us for an exciting day of cutting-edge insights in biophysics. @BiophysicalSoc #Biophysicsweek #studentchapter @iiserkol

My lab recently built MolModa, a free, browser-based molecular docking tool. No installs, no logins—just docking that runs locally for speed and security. I hope you’ll give it a try and help spread the word! durrantlab.com/molmoda#MolMo… #MolecularDocking #CADD #ComputationalBiology

Molecular dynamics requires a lot of expert knowledge to set-up and analyze simulations. We set out to automate it with LLM agents: MDCrow!

Announcing AlphaFold 3: our state-of-the-art AI model for predicting the structure and interactions of all life’s molecules. 🧬 Here’s how we built it with @IsomorphicLabs and what it means for biology. 🧵 dpmd.ai/3URDiNo

Excited for tomorrow's event. @BiophysicalSoc @iiserkol #Celebration #biophysicsweek

Excited to announce the offline celebration of International Biophysics Week on March 27th,2024 @GangeyaChapter focusing on membrane biophysics! Join us for engaging discussions! #BiophysicsWeek @BiophysicalSoc @iiserkol

Exploring the Alternative Conformation of a Known Protein Structure Based on Contact Map Prediction pubs.acs.org/doi/10.1021/acs… #JCIM Vol64 Issue1 #Bioinformatics

For those who wanted the code, it is available (and also improvable) at this link: github.com/profConradi/eigen… In this brief article, you will find some additional explanations about eigenvalues figures: ucm.es/imi/boletin00104#1 40…

Condition of a PhD student, after her/his supervisor suggests to carry out a new kind of research experiment..

We are back with the International Biophysics Week Celebration 2023. Use the Google meet link: meet.google.com/shj-kzsr-pat to join us tomorrow from 10.50 am. Looking forward to your active participation... #BiophysicsWeek @BiophysicalSoc @iiserkol

We are looking for a #postdoc (Institute-funded PDF) who will be working on MD simulations, enhanced sampling, ML methods, & their application in chemistry and materials. (webpage: sites.google.com/view/tarakk…) Details here: chemistry.iitd.ac.in/news/12 Pls apply/RT #compchem

SynapseML unifies several existing ML frameworks and new @microsoft algorithms in a single, scalable API, with the goal of simplifying the creation of massively scalable machine learning pipelines.

Biophysics at the Dawn of Exascale Computers thematic meeting is underway in Hamburg! #BPShamburg2022

1/5 Symmetric Molecular Dynamics (symd) is MD where positions are always symmetric. It can be used to crystallize w/ any symmetry group. In our first work, we use it to make an atlas of all stable Lennard-Jones solids Paper: arxiv.org/abs/2204.01114 Code: github.com/whitead/symd

Biophysics week 2022 celebration. The day had exiting talks and insightful discussion. @BiophysicalSoc @iiserkol