GeneNetwork is a free FOSS FAIR web service for genetics, genomics & EHR data. Precision medicine—Like GTEx but more species, realtime stats. Since Jan 1994!
Joined October 2016
- Tweets 371
- Following 502
- Followers 174
- Likes 130
45 Photos and videos
21 Mar 2023
Massive overhauls of GeneNetwork databases to improve speed and to prevent table locks during updates and edits. Now using InnoDB: en.wikipedia.org/wiki/InnoDB
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14 Oct 2022
Terrific presentations by @flavia_villani & @AndresGuarahino in genetics course at UTHSC on the pangenome draft paper
biorxiv.org/content/10.1101/…
and paper with @erikgarrison and @v_colonna on cross-chromosome recombination in humans. Yes it happens!
biorxiv.org/search/flavia%…
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genenetwork retweeted
New package from our group: MetabolomicsWorkbenchAPI.jl is a Julia package to work with the Metabolomics Workbench REST service. @GeneNetwork2 @OPARProject
3 Sep 2022
New package: MetabolomicsWorkbenchAPI v0.1.0 announced #JuliaLang
Release notes:
> - Initial release version 0.1.0
Registration: github.com/JuliaRegistries/G…
Repository: github.com/senresearch/Metab…
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29 Sep 2022
Pjotr Prins, lead of GeneNetwork FOSS team headed up presentations at Tenth Anniversary of GNU Guix:
10years.guix.gnu.org/video/g…
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26 Sep 2022
CHALLENGE: How to keep genetic and genomic data unidentifiable but sharable?@erikgarrison @pjotrprins and @RichardMott7)are making progress toward this key challenge in individualized health care.
Pangenomes need protection too! Here is Erik’s latest
privvg.github.io/2022/09/24/…
25 Sep 2022
Several user interface upgrades and addition of icons to GeneNetwork’s main Search page today (25Sep2022).
Thanks to Zach Sloan.
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20 Aug 2022
GeneNetwork is working beautifully at Day 1 of @SysGenSchool
More intense use coming soon.
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genenetwork retweeted
16 Aug 2022
We develop a method for high-throughput frailty assessment using machine vision is out @NatureAging. We worked with Gary Churchill and @NathanShockCtrs This tech will enable scalable and objective aging studies. Detailed tweet to follow. rdcu.be/cTLJi
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20 Aug 2022
Rupert highlighting boolean networks for ageing and metabolism @sysgenschool
He is using Minerva for this work. We will be test driving this week.
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genenetwork retweeted
19 Aug 2022
plot your data.
plot your data.
plot your data.
plot your data.
plot your data.
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20 Aug 2022
Cool resources for @sysgenschool from Rupert Overall are here:
rupertoverall.net/software/
20 Aug 2022
Cool resources for @sysgenschool from Rupert Overall are here:
rupertoverall.net/software/
21 Jul 2022
Great Hacker News thread on user interface design and optimization. It hard and a community effort—
news.ycombinator.com/item?id…
20 Jul 2022
Hey GN coding team— to say but correlations are running VERY SLOWLY today, even against BXD phenotypes. What gives? Took 262 seconds. Is one process competing with another?
10 Jul 2022
Worth following Albert Rapp @rappa753 . Code we might use for improved GUIs.
31 May 2022
I am rebuilding my #rstats blog from the bottom up with #quarto. This will let me use quarto's cool new tricks like tabs and easy columns.
I've already spent hours using quarto's great docs to build a custom blog. If you want to do the same, let me show you what I did.
8 Jul 2022
And more summaries from Verónica.
8 Jul 2022
8 Jul 2022
Cool stuff. We should add links to www. genenetwork.org.
Verónica , would love to give you a tour of GeneNetwork at some point by Zoom. Oldest web service in biomedical research. Reach out at labwilliams@gmail.com
9 May 2022
Hello everyone, I share with you some networks that I have made in different tools for network analysis. I highly recommend these tools. Greetings.
#Gephi #Gephisto #VosViewer #Cytoscape #Kumu #GraphInsight #NodeXL #orangedatamining #Graphia #Graphistry #SocNetV #Tulip #dataviz
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12 Jun 2022
Interesting possible addition to GN.
12 Jun 2022
This is where GeneNetwork shines.
12 Jun 2022
As soon as experimentalist stop citing rodent studies based on a single strain of mouse or rat. That is n = 1. About 95% of studies using mouse and rat and Celegans are n = 1. What does that say about robustness of hard-core neuroscience? @DavidAshbrook @KordingLab @IBANGStweets
12 Jun 2022
Great
12 Jun 2022
Can't stop thinking about this pic.
"Human experience of space and time in the physical world."
[Eureka! by RJ Blin-Stoyle, 1997]
