🧬🦠 AMR/Microbial Genomics/Bioinformatics. Tracking AMR bacteria from a One-Health perspective. Passionate ➡️ phylogenomics, plasmids and phages. 🇦🇷 in 🇨🇭
Joined April 2013
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After 7 years, I’m saying goodbye to the lab that shaped a big part of my scientific journey.
I earned here my PhD in Genomics & Bioinformatics, publishing research and building the lab’s bioinformatics pipelines from the ground up. A challenging and very rewarding experience.
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Grateful to colleagues, mentors, and collaborators for the trust, discussions, and shared problem-solving over the years.
Looking ahead to new challenges and opportunities, and excited to keep building and collaborating.
#Bioinformatics #Genomics #CareerTransition #timetomoveon
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Javier E. Fernandez @javif86.bsky.social retweeted
26 Sep 2025
Hot take: It is way past time we abandon the commonly used "fundamentals first"/task decomposition/isolated drilling approach to teach a movement skill to a new learner! It is not necessary. LP vs NLP does NOT depend.
Evidence reviewed in my new book:
buff.ly/Z51yUQK
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Javier E. Fernandez @javif86.bsky.social retweeted
6 Sep 2025
NEW BOOK is in the home stretch!!
Table of Contents..
Preface: Apologies For My Lack Of A Response
1. A Grad Course In Ecological Dynamics I: Coordination Dynamics
2. A Grad Course In Ecological Dynamics Ii: The Inertia Tensor & Dynamic Touch
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Javier E. Fernandez @javif86.bsky.social retweeted
6 Jul 2025
855 pilotos en la historia de la Fórmula 1. Solo 26 fueron argentinos.
Tuvieron que pasar 23 años para volver a tener a uno de los nuestros en la categoría máxima.
Es ahora el momento donde mas hay que bancarlo. Juntos somos invencibles.
#SiempreConEl43
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RT @GamarnikLab: La secretaría de Ciencia conducida por Dario Genua censura proyectos. Esto es de extrema gravedad, nunca visto en Democrac…
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Javier E. Fernandez @javif86.bsky.social retweeted
5 Jun 2025
Observation: the majority of “game intelligence” in team sports comes from the coach - through the asymmetric transmission of mental models (schemes/structures/plays/a series if the this happens the do that rules) given to the players from the coach.
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Javier E. Fernandez @javif86.bsky.social retweeted
31 May 2025
Toda la bronca y energia q tenemos usémosla para mandarle fuerzas y buena energia a @FranColapinto , respondan con su mensaje y quien sabe capaz los ve hoy ❤️🙌
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Javier E. Fernandez @javif86.bsky.social retweeted
27 Mar 2025
If you are interested in phage satellites, we hope you'll enjoy this. Fun collaboration with the Rocha, Seed, Bikard, and Chen labs!
nature.com/articles/s41579-0…
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Javier E. Fernandez @javif86.bsky.social retweeted
13 Mar 2025
Becas disponibles para curso de genómica microbiana en Tucumán, Argentina
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Javier E. Fernandez @javif86.bsky.social retweeted
12 Mar 2025
We're hiring a bioinformatics postdoc to join our growing lab and explore viral ecology, metagenomics, and host-microbe interactions! integrativeviromicslab.com/o…
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Javier E. Fernandez @javif86.bsky.social retweeted
In the 20th century, non-Euclidean geometry transformed how we model the world with pen and paper. In this century, it’s revolutionizing how we model the world with machines.
Our review on the topic is out arxiv.org/pdf/2407.09468, led w the brilliant
@naturecomputes @johmathe
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Javier E. Fernandez @javif86.bsky.social retweeted
15 Jul 2024
Beyond Euclid: An Illustrated Guide to Modern Machine Learning with Geometric, Topological, and Algebraic Structures
New review out with @ninamiolane, co-led by myself, @johmathe & @mathildepapillo
Check out our visual taxonomies of non-Euclidean structure in data & ML models
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🤯 learning so much from this piece!
Highly recommended!! #GDL
18 Oct 2023
We proudly present our 524 page book on equivariant convolutional networks.
Coauthored by Patrick Forré, @erikverlinde and @wellingmax.
maurice-weiler.gitlab.io/#cn…
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Nice to read this today! I had to decide if going for a softer core or not, and luckily I made the right choice 😅👌
Do you make core genome alignments for phylogenomics? @monaltaouk and I explored how including sites with some missing data (a soft core) can improve analysis, especially for large datasets.
microbiologyresearch.org/con…
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Re-reading these wonderful pieces preparing for what comes in 2025 😉
#GNNs #deeplearning #genomics #bioinformatics
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Very much enjoying the pre-print. I hope Santa brings me the actual book 📖. 🎄
Deep Learning on Graphs by Yao Ma and Jiliang Tang
A comprehensive text on foundations and techniques of graph neural networks with applications in NLP, data mining, vision and healthcare.
ow.ly/AyCC50G0I49
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RT @MicrobiomDigest: Infamous paper that popularized unproven COVID-19 treatment finally retracted
Study on hydroxychloroquine by Didier R…
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Javier E. Fernandez @javif86.bsky.social retweeted
15 Dec 2024
- Franco, tenés el auto todo roto, no podés ser más rápido que Doohan
- Decías?
#ColapintoToF1In2025 🇦🇷
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