@nygenome's Technology Innovation Lab : @mssanjavickovic @manimota @yougotkunal @Chao00Yan @f_cambuli @sarafedez_ @dwmckellar @cwpfautz
Joined March 2017
- Tweets 400
- Following 225
- Followers 1,742
- Likes 264
25 Photos and videos
Check out our latest preprint in collaboration with @satijalab & @landau_lab from @nygenome describing #NTTseq, a new method for multiplexed CUT&Tag that leverages nanobodies to simply and robustly profile multiple chromatin marks in single cells. biorxiv.org/content/10.1101/…
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Big news: The Vicković Lab’s (@NYGCtech) study on colon aging has been accepted by @NatureBiotech! The team built a detailed atlas of aging colon tissue, using spatial transcriptomics a new tool (cSplotch) to profile ~1,500 samples & 400k nuclei.
Link: bit.ly/4hj3ry7
ALT cSplotch Summary Schematic
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20 Nov 2023
Super happy to see our work on spatial host-microbial interactions out and about! Congrats to Britta and @mstrazar07 who spearheaded the work! This was one for the ages! Big thanks to @NYGCtech @Cancer_dynamics @ColumbiaBME @KAWstiftelsen @broadinstitute @UU_University @NHGRI
20 Nov 2023
Spatial host–microbiome sequencing reveals niches in the mouse gut go.nature.com/3sGmJbU
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👋 Welcome to the @NYGCtech lab Ruiyang He! Ruiyang is a PhD student from @ColumbiaBME who will blend #computationalmethods with #spatialtranscriptomics tech to delve into spatial organization's role in development & disease. 🧬🔬 #Science #Research
The IICD welcomes Ruiyang He, @ColumbiaBME PhD student in @mssanjavickovic lab @NYGCtech. Ruiyang will develop novel #computationalmethods integrated with advances in #spatialtranscriptomics technologies to dissect the importance of spatial organization in development & disease.
ALT Ruiyang He
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Welcome Roy! Roy is a @ColumbiaBME student in @mssanjavickovic lab @NYGCtech, working on optimizing multi-omics technologies and leveraging such tools to identify therapeutic targets for disease networks. #ColumbiaBME #NYGCtech #multiomics #therapeutictargets
Roy!
The Institute welcomes a new member: Roy Ghosh, a @ColumbiaBME student in @mssanjavickovic lab @NYGCtech, who will work on optimizing multi-omics technologies and leveraging such tools with the aim of identifying translatable therapeutic targets critical to disease networks.
ALT The Institute welcomes a new member: Roy Ghosh, a biomedical engineering student in Sanja Vickovic's lab who will work on optimizing multi-omics technologies and leveraging such tools with the aim of identifying translatable therapeutic targets critical to disease networks.
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🔬Insights from @mssanjavickovic on her journey through interdisciplinary collaboration! Discover how her work at the intersection of genomics and biomedical engineering with @NYGenome & @cancer_dynamics sparked innovation and new perspectives.🌟 #ScienceCollab #InnovationJourney
The Irving Institute for Cancer Dynamics celebrates 5 years. The idea of creating an Institute @Columbia bridging the gap between #mathematicalsciences & #cancerresearch started in 2016. In the Spring of 2018, @cancer_dynamics became a reality. Read more:
bit.ly/IICDanniversary
ALT Simon Tavaré at the Mathematical and Computational Methods in Cancer and Biology, a symposium in March 2023 celebrating the Institute’s 5th anniversary and his 70th
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Another researcher joins the IICD: Craig Fouts, an MS in @APAMMSECU, develops statistical #machinelearning tools and designs probabilistic models for #singlecell genomics in @mssanjavickovic and @bidumit labs @NYGCtech.
ALT Craig Fouts
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🔬 Excited about @mssanjavickovic's insights in @CellSystemsCP on the potential of spatial molecular profiling! 🧪🔍 #CellSystems #MolecularProfiling 📚 Check it out: cell.com/cell-systems/fullte…
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2 Aug 2023
A pioneer in spatially resolved transcriptomics and genomics methods, Sanja Vicković recounts her journey from professional ice hockey player to running her own lab
go.nature.com/3OmrPlK
rdcu.be/dg9s4
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IICD member Sanja Vicković was recently awarded a two-year grant from @TargetALS_fdn for her project "creating a spatial genomics resource for ALS-FTD neuropathies." Read more: bit.ly/44dDisj
cc: @ColumbiaBME @NYGCtech @nygenome
ALT Headshot of Sanja Vicković
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9 Feb 2023
Sanja Vickovic on spatial host-microbiome sequencing #AGBT23
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8 Jun 2022
The napari-PICASSO plugin for @napari_imaging to unmix images with fluorescence spillover is out. Come to poster 576 @agbt to chat about the plugin and teaching an @illumina
HiSeq 2500 new tricks.
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26 Apr 2022
We posted 8 positions in the last week alone @nygenome @NYGCtech Come join the best #Innovation program in the country to work with @manimota @raimondi_ivan @yougotkunal @Chao00Yan nygenome-openhire.silkroad.c…
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Check out the tweetorial below on #PySeq2500 from @NYGCtech ‘s @yougotkunal and @nygenome ‘s @joanapetrescu! In it they walk you through how they used an Illumina HiSeq2500 for imaging and how you can run your advanced assay on your HiSeq2500 too!
24 Mar 2022
@joanapetrescu and I are excited to share our work repurposing @illumina HiSeq 2500s to automate highly multiplexed immunofluorescence imaging (4i) @SciReports. 1/10
rdcu.be/cJI0n
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28 Jan 2022
High-powered imaging genomics data #OpenSource tools = #ImagingTheFuture!
Kunal Pandit is building an open access plugin for the @napari_imaging hub that will make it easier for researchers around the world to make detailed maps on how genes are expressed throughout a tissue
ALT Photo of Kunal in the lab wearing nitrile gloves and holding up a rectangular device to their face
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10 Mar 2022
My labs @nygenome @NYGCtech @ColumbiaBME @UU_University hiring at all levels! If you’re interested in #techdev #singlecell #SpatialTranscriptomics @humancellatlas get in touch with bio&description of (i) what you want to work on and (ii) fav project so far svickovic@nygenome.org
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4 Mar 2022
Ivan Raimondi from @nygenome on multi factorial chromatin profiling at single-cell resolution #singlecellgenomicsday
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4 Mar 2022
Harm Wessels and Carol Dalgarno on new technologies and opportunities for single-cell perturbation screens #singecellgenomicsday
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4 Mar 2022
Yuhan Hao on cross-modality integration of single cell data #singlecellgenomicsday
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