@RonZeira profile picture
Ron Zeira @RonZeira

Research scientist

Joined March 2021
  • Tweets 12
  • Following 52
  • Followers 41
Photos and videos
Ron Zeira@RonZeira
1 Oct 2024
Happy to share that our paper on inferring spatially resolved expression from H&E images is published in #PLOSCompBio I want to thank @leon_anavy , Zohar Yakhini, Ehud Rivlin and Daniel Freedman for their guidance and support driving this project doi.org/10.1371/journal.pcbi…

HIPI: Spatially resolved multiplexed protein expression inferred from H&E WSIs

Author summary We present HIPI (H&E Image Interpretation and Protein Expression Inference) for predicting cell marker expression from tumor H&E images. We process paired H&E and CyCIF images taken...

journals.plos.org
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Ron Zeira retweeted
RECOMB Conference Series@RECOMBconf
16 Apr 2023
Ben Raphael is next, PASTE2: Partial Alignment of Multi-slice Spatially Resolved transcriptomics data. #RECOMB2023
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Ron Zeira@RonZeira
11 Jan 2023
Our work on "Partial Alignment of Multi-slice Spatially Resolved Transcriptomics Data" was accepted to #RECOMB2023. @benjraphael #XinhaoLiu PASTE2 uses a novel partial optimal transport formulation for 3D reconstruction of partially overlapping ST slices biorxiv.org/content/10.1101/…

PASTE2: Partial Alignment of Multi-slice Spatially Resolved Transcriptomics Data

Spatially resolved transcriptomics (SRT) technologies measure mRNA expression at thousands of locations in a tissue slice. However, nearly all SRT technologies measure expression in two dimensional...

biorxiv.org
RECOMB Conference Series@RECOMBconf
10 Jan 2023
15 more papers are accepted to #RECOMB2023 after a round of revisions. The list is now updated: recomb2023.bilkent.edu.tr/pr…

ALT So Excited Minions GIF

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Ron Zeira retweeted
BioTechniques
@MyBioTechniques
14 Nov 2022
Many tools can only analyze spatial gene expression in 2D, so researchers from @Princeton developed #PASTE, a tool that integrates spatial transcriptomic data from multiple slices to generate a 3D view of gene expression biotechniques.com/molecular-… @benjraphael @RonZeira 🖥️(4/8)

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Ron Zeira retweeted
Ben Raphael@benjraphael
19 May 2022
Now published in revised form in @naturemethods after a constructive review process. rdcu.be/cNFXO

Ben Raphael@benjraphael
17 Mar 2021
Our new method PASTE aligns and integrates spatial transcriptomics data from multiple tissue sections. Great work by @RonZeira and @mrland99 1/4 biorxiv.org/content/10.1101/…
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Ron Zeira@RonZeira
17 May 2022
A beautiful summary of our method PASTE by @MollySharlach @mrland99 @polishstudent17 @benjraphael engineering.princeton.edu/ne…

Princeton Engineering - New method melds data to make a 3-D map of cells’ activities

Princeton engineers are using a cell's surroundings to help biologists make more sense of gene expression information. Their new system could open the door to identifying rare cell types and choosing...

engineering.princeton.edu
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Ron Zeira retweeted
Nature Methods@naturemethods
16 May 2022
And read the accompanying News & Views here: nature.com/articles/s41592-0…
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Ron Zeira retweeted
Nature Methods@naturemethods
16 May 2022
Using transcriptomic similarity and spatial coordinates, PASTE allows aligning and integrating spatial transcriptomics data generated from adjacent tissue slices. @RonZeira @benjraphael nature.com/articles/s41592-0…
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Ron Zeira@RonZeira
29 Aug 2021
Check out our presentation on “Alignment and Integration of Spatial Transcriptomics Data” tomorrow at #RECOMB2021
recomb2021@recomb21
28 Aug 2021
#RECOMB2021 begins tomorrow at 10 am US ET with a fantastic program (recomb2021.org/program). The first day of the conference will feature welcome remarks from the organizing committee, two distinguished keynote talks, and four sessions.
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Ron Zeira@RonZeira
22 Jul 2021
How close is a copy number profile to a whole genome duplication event? Check out our #WABI2021 paper on “Genome Halving and Aliquoting Under the Copy Number Distance” with Geoffrey Mon and @benjraphael drops.dagstuhl.de/opus/vollt…
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Ron Zeira@RonZeira
17 Mar 2021
Preprint of our method PASTE for alignment and integration of spatial transcriptomics data.
Ben Raphael@benjraphael
17 Mar 2021
Our new method PASTE aligns and integrates spatial transcriptomics data from multiple tissue sections. Great work by @RonZeira and @mrland99 1/4 biorxiv.org/content/10.1101/…
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