@Why_NeverS profile picture
Yannis Nevers @Why_NeverS

Post-doctoral researcher interested in Comparative Genomics.

Joined July 2016
  • Tweets 70
  • Following 53
  • Followers 73
10 Photos and videos
Pinned Tweet
Yannis Nevers@Why_NeverS
25 May 2022
Nothing in biology makes sense.
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Yannis Nevers retweeted
The Biodiversity Genomics Academy@TheBGAcademy
16 Oct 2024
Session 24: OMA/OMArk is starting in 1 hour (14:00 UTC). To join in the session, jump over to our discord at: discord.gg/gF73fCF4 Or you can join in on the YouTube stream at: youtube.com/@thebiodiversity… @SinaMajidian @OMABrowser

Discord - Group Chat That’s All Fun & Games

Discord is great for playing games and chilling with friends, or even building a worldwide community. Customize your own space to talk, play, and hang out.

discord.com
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Yannis Nevers retweeted
Sina Majidian@SinaMajidian
16 Oct 2024
In half an hour, Yannis Nevers @Why_NeverS and I will be talking about OMA and OMArk for homology exploration and gene annotation quality control! Streaming available on youtube.com/@thebiodiversity…

The Biodiversity Genomics Academy@TheBGAcademy
16 Oct 2024
Session 24: OMA/OMArk is starting in 1 hour (14:00 UTC). To join in the session, jump over to our discord at: discord.gg/gF73fCF4 Or you can join in on the YouTube stream at: youtube.com/@thebiodiversity… @SinaMajidian @OMABrowser
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Yannis Nevers retweeted
The Biodiversity Genomics Academy@TheBGAcademy
15 Oct 2024
Another great day of sessions tomorrow with: T2T assemblies w/ Verko - @sergekoren at 6am UTC Genomes on a Tree - @CibeleCaio at 12pm UTC OMA/OMArk - @SinaMajidian at 3pm UTC Join us on discord.gg/gF73fCF4 | Sign up at thebgacademy.org @EBPgenome @darwintreelife
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Yannis Nevers retweeted
Sina Majidian@SinaMajidian
14 Oct 2024
Interested in minimizers and their applications in genomics? Check out our review.. When Less is More:genomebiology.biomedcentral.… in @GenomeBiology! A great team effort by @El_Malijo @silviaprietob @LucyFISHgerald @YazdizadehAli @sedlazeck @cdessimoz @Gloveface
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Yannis Nevers retweeted
Deepak Yadav@dpkyadav23
18 Sep 2024
An insightful talk by @cdessimoz explaining OMArk, a work led by @Why_NeverS, at #ECCB2024. @dbc_unil
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Yannis Nevers retweeted
Richard Durbin@richard_durbin
6 Aug 2024
Gene Myers just released super fast whole genome aligner github.com/thegenemyers/FAST…. He and @c1zhou and I have lots of ideas for downstream use.
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Yannis Nevers retweeted
Sina Majidian@SinaMajidian
9 Mar 2024
📢CALL FOR ABSTRACTS📢 🌟Abstract submission is now open for the Quest for Orthologs meeting #QFO8 which will be held at the University of Quebec in Montreal, Canada on July 17-18! More info at event.fourwaves.com/qfo8 Deadline: April 26.
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Yannis Nevers retweeted
Sina Majidian@SinaMajidian
6 Mar 2024
Heading to Paris to give a talk on FastOMA and Read2tree for orthology and phylogeny inference! Thursday 7th, at 2pm in the PAGE group (Protein And Gene Evolution) at the Institut Pasteur! Read2Tree: nature.com/articles/s41587-0… FastOMA: biorxiv.org/content/10.1101/…

Inference of phylogenetic trees directly from raw sequencing reads using Read2Tree

Nature Biotechnology - Phylogenetic trees are generated from sequencing reads without genome assembly or annotation.

nature.com
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Yannis Nevers retweeted
European Reference Genome Atlas@erga_biodiv
1 Mar 2024
#ERGABlog | New Interview with @ADennis1980 - Learn about her views on the critical process of genome #annotation, the need to sequence more diverse #genomes and her vision for the #ERGA Annotation Committee @UNamur erga-biodiversity.eu/post/5-… #Biodiversity #Genomics

5 Questions to Alice Dennis, chair of the Annotation Committee

Read the full interview with Alice Dennis below:1. Can you introduce yourself and how you got involved with ERGA and the Annotation committee? My name is Alice Dennis and I am a lecturer at the...

erga-biodiversity.eu
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The repertoire of STING-regulated #genes in ten Drosophila 🪰 species spanning 50 million years of #evolution doi.org/10.1093/molbev/msae0… Congrats @aathbt !
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Yannis Nevers retweeted
Nature Biotechnology
@NatureBiotech
21 Feb 2024
Quality assessment of gene repertoire annotations with OMArk go.nature.com/4bH5OaF
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Our OMArk paper is finally out at @NatureBiotech! I am excited to share the final results of our work with @Gloveface @cdessimoz @VictorRossier @DessimozLab. OMArk is a one-stop shop for eukaryotic genome annotation assessment. Link : nature.com/articles/s41587-0… (🧵)

Quality assessment of gene repertoire annotations with OMArk

Nature Biotechnology - A new tool checks the quality of gene annotations in genome sequences.

nature.com
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OMArk is available on GitHub (github.com/DessimozLab/OMArk), and you can also install it with PyPi (pypi.org/project/omark/) or Bioconda (anaconda.org/bioconda/omark). Please give it a try!

GitHub - DessimozLab/OMArk

Contribute to DessimozLab/OMArk development by creating an account on GitHub.

github.com
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You can also use it through our webserver (omark.omabrowser.org)! We provide OMArk results for many proteomes from @UniProt @Ensembl and @NCBI RefSeq. This makes it easy to compare annotations of close species. Here are the results for feline proteomes (🐱🐯🦁).
Graphical representation of OMArk results for ~20 proteomes of the Felidae clade. Most proteomes are highly completes and consistents.

ALT Graphical representation of OMArk results for ~20 proteomes of the Felidae clade. Most proteomes are highly completes and consistents.
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Yannis Nevers retweeted
SIB@ISBSIB
21 Feb 2024
How to evaluate the quality of a genome annotation? Introducing #OMArk, a groundbreaking tool by SIB’s @Why_Nevers & @Dessimozlab and part of the SIB Resource #SwissOrthology, now featured in @NatureBiotech: nature.com/articles/s41587-0…

Quality assessment of gene repertoire annotations with OMArk

Nature Biotechnology - A new tool checks the quality of gene annotations in genome sequences.

nature.com
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