Joined September 2015
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🚨So proud to present the first study from our @CCG_UCL group together with @CharlesSwanton @NnennayaKanu and led by @ojlucas with key collaboration @Ward__Sophie and fundamental support @Rija_Zaidi_ @abi_bunkum & many others Out in @NatureGenet 👇 doi.org/10.1038/s41588-024-0… 🧵👇
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🎓 ABSOLUTELY BURSTING WITH PRIDE! Huge congrats to our @CCG_UCL first doctoral graduates: Dr @Rija_Zaidi_, Dr @abi_bunkum & Dr @ojlucas! 🎉 Whatever pathways they choose next, I have no doubt these brilliant minds will lead critical advances in our society—we're all so lucky!✨
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Huge thanks to @ucl for organising such a wonderful celebration & infinitely grateful to everyone who supported along the way 🙏 🙏 @uclcancer @CRUKresearch @The_MRC @wellcometrust @CRUKCOLcentre @RosetreesT @uclmedsci 🙏
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On a personal note, it was incredibly special to finally wear the gown from my own graduating university, @unimib. Thanks @ucl for this! 🇮🇹🎓 A wonderful reminder of where my pathway started at @unimib Informatica, and of @BonizzoniPaola who, in turn, supported me at the time 🙏
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Simone Zaccaria retweeted
🫁 What if lung cancer metastases are not just destinations, but active sources of further spread? A new Nature study from TRACERx–PEACE offers one of the most detailed evolutionary maps of NSCLC metastasis to date. Using 501 longitudinally collected primary and metastatic tumor samples from 24 patients, researchers reconstructed how lung cancer spread from diagnosis to death, and the findings challenge the simple “primary tumor → metastasis” model. Key signals: 🧬 62.5% of patients had multiple primary tumor subclones that seeded distinct metastases 🔁 60% of sampled metastases were seeded by other metastases ⏳ Metastases present for longer were more likely to seed further disease 📍 Most metastatic migrations stayed within the same anatomical cavity ⚠️ Subclones that escaped the thorax were enriched for chromosomal instability The message is clear: metastatic NSCLC is not static. It is spatially organized, genetically diverse, and continuously evolving. This study does not immediately change clinical practice, but it gives a powerful biological rationale for better relapse monitoring, deeper metastatic profiling, and carefully selected local treatment strategies. oncodaily.com/oncolibrary/lu… @SonyaHessey @AMIHuebner @HaaseKerstin @KristianaGrigo4 @wingkinliu @ojlucas @FVasilopoulou @ProfSiowMingLee @DionysisPastos @MatthewGKrebs @LeQuesneLab @dean_fennell @crispinhiley @ZaccaSimo @NickyMcGranahan @CharlesSwanton #LungCancer #NSCLC #TRACERx #PEACEStudy #Metastasis #CancerEvolution #TumorHeterogeneity #ChromosomalInstability #PrecisionOncology #ThoracicOncology #OncoDaily #OncoDailyLung
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🚨 Huge honour to have helped supervise this landmark PEACE study! New insights into metastasis a unique dataset of unprecedented resolution on metastatic evolution and dissemination that we hope will drive future advances 🙏 @CR_UK @CRUKresearch. Please take a look 👇
Replying to @SonyaHessey
Through the integration of the #PEACE autopsy programme, which allows high breadth metastasis sampling, with the #TRACERx lung study, we collected and studied 501 primary and metastatic tumour samples from 24 patients with #NSCLC enrolled in the both studies. 2/9
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Simone Zaccaria retweeted
Replying to @benjraphael
Very fortunate to work alongside a fantastic team: @abi_bunkum @HaaseKerstin @AMIHuebner @KristianaGrigo4 Cristina Naceur-Lombardelli steered by: Mariam Jamal-Hanjani @CharlesSwanton @NickyMcGranahan @ZaccaSimo
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Simone Zaccaria retweeted
Using MACHINA from @benjraphael's lab to infer metastatic migration patterns, we found that NSCLC primaries had multiple seeding subclones more often than a single seeding subclone. 4/9
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Simone Zaccaria retweeted
Through the integration of the #PEACE autopsy programme, which allows high breadth metastasis sampling, with the #TRACERx lung study, we collected and studied 501 primary and metastatic tumour samples from 24 patients with #NSCLC enrolled in the both studies. 2/9
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Simone Zaccaria retweeted
Excited to share our ‘Evolutionary characterization of #LungCancer metastasis’ in #TRACERx & #PEACE, published today in @Nature: a decade spanning effort led by the Jamal-Hanjani lab, @SwantonLab, @NickyMcGranahan & @ZaccaSimo at @uclcancer & @TheCrick. Link below
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Simone Zaccaria retweeted
Excited to share our latest study in @CELL @MDAndersonNews a new single cell DNA&RNA co-assay technology (wellDR-seq) used to study the interactions of DNA copy number and gene expression during breast cancer progression led by @KaileWang @RuiYejerry cell.com/cell/abstract/S0092…
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🚨 Thrilled to have helped @NickyMcGranahan co-supervise this brilliant work! ALPACA shows how SNVs can be used as barcodes to untangle complex evolution of clone-specific CNAs, revealing their crucial role in cancer progression and their prognostic potential! Read more👇
Excited to share our new paper in @Nature, led by @PiotrekPaw_ @KristianaGrigo4 ! 🧬 We developed a new method, ALPACA, to untangle the co-evolution of single nucleotide variants and copy number changes in tumours. Check it out: tinyurl.com/yrppttr3
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As always, we are hugely grateful to our funders @CRUKresearch , @RosetreesT and @CRUKCOLcentre for supporting @abi_bunkum and my contribution to this important work; none of this would have been possible without them! 🙏
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Simone Zaccaria retweeted
20 Jun 2025
We're a month out from #ISMBECCB2025!  You can now access the abridged agenda, downloadable schedules, poster listings, and SciFinder search tool links directly from the homepage: iscb.org/ismbeccb2025/home Click the link you need, or use the Programme &  Agenda menu for more options!
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Simone Zaccaria retweeted
22 Apr 2025
Be a part of ISMB/ECCB 2025: Shape the future of computational biology. Attend in-person in Liverpool or virtually for live sessions, Q&A, and exclusive networking. Elevate your research at the forefront of bioinformatics!
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Huge congratulations to @LucreziaPatruno from @CCG_UCL for being awarded one of the best abstract awards at AI in Oncology in Paris, we are so proud! Join ISMB to hear her full story on the next advances in call CNAs from single cell seq!
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