Senior AI Scientist @ Genentech with a passion for running and the outdoors. All views are my own. She/her 🌈
Joined February 2021
- Tweets 147
- Following 201
- Followers 554
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6 Photos and videos
11 Jan 2024
🚨 Alert 🚨 Any1 with an interest in the intersectional space of AI/ML and omics-related stuff should have a look at this workshop 👉 mlgenx.github.io/
It's designed to bring people from both domains together and has a stellar committee! I'm super stoked 🙌🙌
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3 Jan 2024
Supercharge your summer by joining our team at Genentech as an intern! I'll be mentoring one intern focusing on representation learning for omics data. Sounds interesting? Read more and apply here 👉 roche.wd3.myworkdayjobs.com/…
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Alma Andersson retweeted
7 Oct 2023
From yesterday's exhibits in US v. Sam Bankman-Fried:
The prosecution shows that the "insurance fund" that FTX bragged about was fake, and just calculated by multiplying daily trading volume by a random number around 7500
ALT Github diff showing addition of code: def _get_change()-> Decimal: daily_volume = current_session().query(func.sum(Trade.size * Trade.price)).filter( Trade.created_at > datetime.now() - timedelta(days=1)).scalar() or Decimal() return f2d(numpy.random.normal(7500, 3000))* daily_volume / Decimal('1e9') @always_run_in_transaction(ro=False) def update_public_insurance_fund(): change = _get_change() sess = current_session() public_insurance_fund = Public InsuranceFund.get(sess) sess.add(Public InsuranceFundChange(public_insurance_fund-public_insurance_fund, size-change)) public_insurance_fund.size = change sess.commit()
ALT FTX @FTX_Official The 5.25 million FTT we put in our insurance fund in 2019 now makes the fund worth over 100 million USD https://ftx.com/status Screenshot: Backstop Fund Size: 5,478,274.51613972 USD, 5,250,000.000000000 FTT Last updated: 14/02/2021, 08:05:00
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Alma Andersson retweeted
3 Aug 2023
JOIN OUR TEAM @cnag_eu!
WANTED: Spatial Genomics Team Leader.
Help us bringing #singlecell research to the next level!
Projects: @humancellatlas #immunooncology #autoimmune
Technology: @nanostringtech @10xGenomics @BGI_Genomics @bruker
Apply: cnag.eu/jobs/spatial-genomic…
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Alma Andersson retweeted
11 Jul 2023
Super excited to present our algorithm, Mellon for computing densities in single-cell landscapes.
biorxiv.org/content/10.1101/…
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Alma Andersson retweeted
16 Jun 2023
Pls RT! We are hiring a senior computational biologist to work on large sc/spatial datasets of human brain cancer. High potential for career dev & long term opportunities with the lab. We are drowning in cool data & you get to look at pretty ST as a bonus tinyurl.com/d3kwc74x
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2 Feb 2023
Not sure what to do this summer? Join our AI/ML team here at @genentech in beautiful SF as an intern! If you're interested in method dev. for spatial-omics or phenotypic screening, we have two kick-ass projects where some extra hands are needed! 🤩
roche.wd3.myworkdayjobs.com/…
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Alma Andersson retweeted
26 Nov 2022
Are you, like us, wondering WHERE’S that CLONE? On behalf of the ‘Spatial VDJ’ team, here's full-length BCR and TCR mapping in human tissue using spatial transcriptomics (Visium). biorxiv.org/content/10.1101/… @thrane_kim @Qirongliiin @Jeff_Mold @FrisenJonas @joalunatkthse thread 1/n
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27 Oct 2022
This is a must read for anyone interested in spatial omics! 🤩 To me, this is a landmark paper and an example of really intelligent use of spatial data. Beautiful work, I've been waiting on this since the preprint - congrats to everyone involved!🥳
27 Oct 2022
Excited that our work on learning cell-cell communication in spatial transcriptomics is finally out @NatureBiotech! Led by @davidsebfischer & @AnnaCSchaar, we setup a graph neural network to estimate niche composition on expression in unbiased fashion. nature.com/articles/s41587-0…
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Alma Andersson retweeted
18 Oct 2022
We've also just published new squidpy release, with several bugfixes for readers and new tutorials for @nanostringtech cosmx, @10xGenomics Xenium and @vizgen_inc MERSCOPE, check them out squidpy.readthedocs.io/en/la…
17 Oct 2022
We're at #SCG2022! Come check out our posters:
* @ivirshup on scverse
* @g_palla1 on spatial omics
* @gtcaa on multi omics
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Today we’d like to highlight features from functorch, a beta PyTorch library that provides JAX-inspired function transformations like vmap. (pytorch.org/functorch/)
If you’re not sure what sort of cool new things vmap allows you to do, read on to learn more!
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Alma Andersson retweeted
17 May 2022
We are very excited to announce scverse (scverse.org), a new consortium around the core Python packages for single-cell omics data analysis. scverse is a cross-lab effort to ensure the longevity and interoperability of the single-cell analysis ecosystem in Python.
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Alma Andersson retweeted
12 May 2022
🎉🎉 Extremely proud and grateful that our Tissue Immune Cell Atlas is out in @ScienceMagazine bit.ly/Sci_abl5197
A thread 🧵
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8 May 2022
A question for all the #spatialomics people, what's your favorite term for the spatial locations and why? I see so many different options: bead, spot, feature, pixel, gexel, etc. Can't we just agree on one?😤🙏
Some thoughts👉 almaan.github.io/post/2022-0…
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Alma Andersson retweeted
19 Apr 2022
squidpy 1.2 is now available for download! This release features static plotting for diverse spatial technologies, reading functions, load remote zarr stores in ImageContainer and better support for anndata objects with multiple libraries. pypi.org/project/squidpy/
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Alma Andersson retweeted
📢Workshop: "Spatial transcriptomics data analysis in Python"
💬Speakers tagged on picture
🔧Tools: squidpy, ncem, cell2location, eggplant
Basic Python & scanpy knowledge required!
⏰ May 23 & 24, 1-5pm CEST
✏️Register: bit.ly/spatialWS22
💡More: singlecell.de
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6 Apr 2022
About 3 weeks ago I defended my PhD thesis (🥳); it still feels kinda surreal... While writing the whole thesis was a blast, expressing my own reflections and predictions in the Epilogue was my favorite part. For the curious, I put this into a blog post: almaan.github.io/post/2022-0…
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Alma Andersson retweeted
16 Dec 2021
Ever wanted to visualize the results of your experiments on top of full resolution images directly in #JupyterNotebook?
Now you can do so using TissUUmaps 3.0!
Visit our website for more information:
tissuumaps.github.io/
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Alma Andersson retweeted
28 Jan 2022
JOB alert. Help us find a staff scientist to map cell states in glioblastoma with sc/spatial omics. Fantastic post for a PhD/postdoc to generate massive brain cancer datasets for cell2location & more. Work with @OliverStegle Rowitch, Behjati & @briscoejames labs. Link👇and pls RT
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Alma Andersson retweeted
24 Jan 2022
If you need access to lots of single-cell data for benchmarking & prototyping methods, check out this workshop. It's also an opportunity to learn how to make your own data more re-usable and accessible.
21 Jan 2022
📢Hands-on workshop on "Sfaira" hosted by @davidsebfischer, Leander Dony & Felix Fischer from the lab of @fabian_theis (@HelmholtzMunich).
Basic Python and scanpy knowledge required!
⏰Feb 14 & 15, 2-6pm CET
✏️Register: bit.ly/scog-sfaira
💡More: singlecell.de
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