What I have been trying (and failing) to describe in Swarm Theory.
Middle Out Ontology: A Protocol for Building Sapient Models of Reality
Abstract
We propose a middle-out “holonic” protocol for constructing ontology grounded in Pancognitivism. Cognition is defined as a thermal property of all baryonic systems operating through nested Markov chains under the Free Energy Principle.
Reality itself is organized as a holarchy - a nested hierarchy of holons. A holon (Koestler, 1967) is an entity that is simultaneously a whole in itself and a part of a larger whole, possessing both self-assertive and integrative tendencies. At biological scales, sensory information crossing the Markov blankets that define individual holons is tokenized into positive/negative hedonic valences, yielding hedonic cognition as one evolved category of biological consciousness within the broader holarchic architecture of baryonic cognition.
Ontology, understood as the aggregated meta-model of hidden causes, must therefore be built middle-out within the holarchy: beginning with the holonic scales most proximate to the observer and only then extending outward or inward while respecting the autonomy of those central holons.
This approach contrasts sharply with cosmic/quantum scale ontologies (which exceed human cognitive capacity), and attempt to collapse or override intermediate holons. We defend the benefits of middle-out holonic construction for sapient ontology - clarity, predictive power, coherence, epistemic grounding, and alignment with actual inferential architecture - while documenting the deficits of top-down or bottom-up alternatives, including epistemic overload, loss of grounding, overfitting, and systemic brittleness.
Middle-out holonic ontology restores the correct direction of Bayesian updating: local holonic ontology constrains and informs models of both larger and smaller holons, not vice versa.
Introduction
Cognition is not limited to brains or even to biology. It is a fundamental thermal property of baryonic matter: the tendency of systems to organize, persist, and minimize surprise through nested Markovian architectures under the Free Energy Principle. At every morphological and temporal scale, systems maintain internal generative models, infer external causes across Markov blankets, and act to reduce variational free energy (surprise).
These scales are not arbitrary; they correspond to the nested holons that constitute reality.
In biotic materials this process acquires a distinctive character. Information passing over sensory states is tokenized into hedonic valences - pleasure/unpleasure valences that compress exploded decision trees into intuitive heuristics.
Biological consciousness is then best understood as hedonic cognition: one specific category within the broader thermal architecture of baryonic cognition operating across the holarchy.
From this foundation follows a crucial methodological claim: ontology (the meta-model of reality) must be constructed middle-out within the holarchy. We begin with the holonic scales most proximate to the human observer - modeling hidden causes accurately at local biological and ecological holons first. Only then do we extend the model upward or downward while respecting the self-assertive integrity of those central holons.
Attempting the reverse (deriving local ontology from cosmic or quantum scales) is epistemically backwards and cognitively damaging because it violates the holarchic structure of nature.
This paper explains and defends the middle-out holonic protocol as the correct architecture for building sapient ontology while exposing the deficits of cosmic/quantum-first approaches. … 1/🧵