Finished a human genome, working on a few more 👨💻 Posts are my own
Joined June 2009
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163 Photos and videos
Adam Phillippy retweeted
14 Aug 2023
Extra-long tandem repeats (ETRs) such as centromeres and immunoglobulin loci are difficult to align. UniAligner is a computational method for efficiently and accurately aligning ETRs, facilitating analysis of their variation and evolution. @AndreyBzikadze
nature.com/articles/s41592-0…
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Adam Phillippy retweeted
9 Aug 2023
Thrilled to share my first paper on GWAS! 📚🧬We utilized imputed genotypes through a new Asian population panel we established, and integrated GWAS with snATAC data to uncover causal cell types! 🧬🧪 Published in Science Advances today! 🎉🥳🥳
doi.org/10.1126/sciadv.adg63…
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Adam Phillippy retweeted
9 Aug 2023
New video from Front Street shows virtually all of downtown Lahaina has been burned down.
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We’re looking for a new Head of Research.
Join us to lead, inspire, and shape the future of bioinformatics
Closing: 2 Oct 2023
9 Aug 2023
Head of Research
We are excited to launch this opportunity to join us as Head of Research @emblebi.
You'll play a key role setting vision, strategy and scientific direction for the Institute, leading the team into the next decade of life science.
embl.org/jobs/position/EBI02…
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Adam Phillippy retweeted
7 Aug 2023
I'm so proud of the @IndigiData initiative. Since starting two summers ago, this workshop has skyrocketed to create timely and much-needed informatics and Indigenous data science workshops on topic areas of direct impact to Tribal Nations. Ahéhée' to everyone who make it happen!
7 Aug 2023
Thank you all so much for your help in TWO @IndigiData #Indigenous #data #science workshops this summer!
We focused on the topics of gene editing, metabarcoding, Indigenous data sovereignty, IP law, and data ethics on Shakopee Mdewakanton Sioux and Lummi lands. Until next year!
ALT Side by side images of IndigiData workshop participants
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Adam Phillippy retweeted
7 Aug 2023
🚀 Unleash the need for speed with the sizzling hot Mashtree v1.4 update! ⚡️ Experience the thrill of faster performance as we bid adieu to the sqlite dependency and usher in a sleeker codebase. 📦Share your thoughts on GitHub issues. ✨💻 Update now: github.com/lskatz/mashtree 🌐
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Distinguished @UofMaryland Professor Rita Colwell made @Forbes' "50 over 50" list of women changing the world through innovation. A renowned microbiologist for her work to eradicate diseases, Colwell also founded a tech company that analyzes microbiomes.
forbes.com/50over50/innovati…
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Adam Phillippy retweeted
3 Aug 2023
NCBI Comparative Genome Viewer, NCBI Datasets, Nextflow, Smudgeplots, Treeval, VGP Galaxy Pipeline!
27 sessions already scheduled across time zones
FREE and OPEN-TO-ALL
Over 310 spaces already booked, so sign up ASAP at BGA23.org/sessions
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Adam Phillippy retweeted
3 Aug 2023
This year BG23 has an Academy! Come learn how to use that software you tried alone but had many questions! Led by experts and developers on BlobToolKit, BUSCO, EarlGrey, EASEL, EBI Data Portals, ENA Submissions, Ensembl Annotation, Gfastar, GoaT, hifiasm, Merqury, MitoHiFi,
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Adam Phillippy retweeted
1 Aug 2023
Major, fatal errors found in the data and methods of a 2020 paper in @Nature, including millions of reads mis-identified as bacteria. The "cancer microbiome" in this study was simply not there. @abrahamgihawi @elapertea @YuchenGe1 @JenniferLu717 biorxiv.org/content/10.1101/…
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Adam Phillippy retweeted
31 Jul 2023
I would like to welcome Jen Troyer, Ph.D., in her new role as incoming Director of NHGRI’s Division of Extramural Operations. For years, Bettie Graham, Ph.D. – a legend @NIH and beyond! – has served in this position; she will be outgoing Director until she retires in late 2023.
ALT Scientist standing with her arms crossed in front of her.
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13 Jul 2023
🧵 on new minimizer-space metagenome assembler metaMDBG 👇
13 Jul 2023
Very happy to present metaMDBG, a new assembler for long accurate metagenomics reads (e.g. PacBio HiFi)!
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11 Jul 2023
My username is not available on Instagram/Threads :( that might be the highest switching cost I've encountered so far
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10 Jul 2023
Promising new metagenome assembler for HiFi data by @gaetan_benoit
9 Jul 2023
Efficient High-Quality Metagenome Assembly from Long Accurate Reads using Minimizer-space de Bruijn Graphs biorxiv.org/cgi/content/shor… #biorxiv_bioinfo
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Adam Phillippy retweeted
9 Jul 2023
Our new minimizer-space HiFi-read mapper, mapquik, is now published online (as an advance article) in Genome Research!
genome.cshlp.org/cgi/content…
The recording for the RECOMB 2023 talk is also now up: youtu.be/ZXZSCDzVp3A
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Adam Phillippy retweeted
6 Jul 2023
Amazingly, we offer this capability completely for free in Galaxy so that all labs, big and small, can take advantage of it. Within VGP, we look forward to working together to assemble all 70k vertebrate species! Tutorials and workflows are available here: galaxyproject.org/projects/v…
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Adam Phillippy retweeted
6 Jul 2023
Super excited to announce our new VGP-ERGA-Galaxy pipeline for scalable, accessible, and reproducible reference genome assembly. In just a few clicks anyone anywhere can assemble their genome to VGP quality! @genomeark @galaxy @erga_biodiv biorxiv.org/content/10.1101/…
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Adam Phillippy retweeted
5 Jul 2023
I'm absolutely thrilled to share that I will be joining @PennGenetics and @PennEpiInst as an Assistant Professor in January 2024! My lab will investigate centromere variation/evolution and its impact on health & disease using long-read sequencing! Reach out if you'd like to join!
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Adam Phillippy retweeted
5 Jul 2023
Many thanks to those who made this work possible!
@mrvollger @naechyun_chen Dylan Taylor, William Harvey @glennis_logsdon @rajivmccoy @mike_schatz
@EichlerEE @EichlerLab @GenomeBiology Special thanks to my team (Xiangyu & Xuankai & others)! genomebiology.biomedcentral.…
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Adam Phillippy retweeted
5 Jul 2023
🎉 Exciting news! Our lab's first publication in Genome Biology is out now! We've delved into the large-scale genomic differences between T2T-CHM13 and GRCh38, shedding light on their association with neurogenic disorders & the evolutionary history of the KLRC gene cluster. 🧬
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