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BioThings API @biothingsapi

Making High Performance Data APIs in Biology. Provide an SDK to build APIs like @mygeneinfo @myvariantinfo

Joined April 2015
  • Tweets 167
  • Following 21
  • Followers 137
19 Photos and videos
Now you can easily find sets of genes involved in #GeneOntology processes, diseases and more with our new @mygenesetinfo API. Try it out at mygeneset.info

My Geneset

A website and API to collect, save, and share genes

mygeneset.info
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BioThings API retweeted
mygenesetinfo@mygenesetinfo
21 Nov 2022
Soft launch of our brand-new MyGeneset.info, a web toolset for sharing functional gene sets in all species with programmatic #API access. A joint work of @vincerubinetti @ravila_4 & the @biothingsapi team of @GreeneScientist & @chunleiwu labs!

My Geneset

A website and API to collect, save, and share genes

mygeneset.info
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Our new SDK release comes with support for both #elasticsearch 7 and 8. Learn more here: pypi.org/project/biothings/

biothings

a toolkit for building high-performance data & knowledge APIs in biology

pypi.org
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New BioThings SDK #pypi package released with support for #python 3.9, 3.10 and a lot of other improvements! pypi.org/project/biothings/

biothings

a toolkit for building high-performance data & knowledge APIs in biology

pypi.org
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The @myvariantinfo talk will be the last talk of the Wednesday #BOSC2022 session on #DataAccess and #visualization
MyVariant.info@myvariantinfo
11 Jul 2022
Interested in the latest developments with MyVariant.info? Our very own @YaoY87 will be giving a talk at #BOSC2022 / #ISMB2022 on Wednesday (Session 3a) open-bio.org/events/bosc-202…
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BioThings API retweeted
DiseaseOutbreak@DiseaseOutbreak
6 Jun 2022
We would like to thank the teams at @gisaid @cvisb @scrippsresearch @biothingsapi for making this possible, our funders @niaidnews @cdcgov @data2health, & the thousands of organizations & individuals around the world who share data to fight the pandemic.
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MyGene.info@mygeneinfo
20 Oct 2021
New #preprint on the @biothingsapi SDK to build your own RESTful APIs from the @chunleiwu and @andrewsu labs at @scrippsresearch. biorxiv.org/content/10.1101/…
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You can install the #python package using "pip install biothings" pypi.org/project/biothings/

biothings

a toolkit for building high-performance data & knowledge APIs in biology

pypi.org
MyVariant.info@myvariantinfo
20 Oct 2021
APIs like ours play a big role in #FAIRdata and #OpenData. The BioThings SDK makes building such APIs easier. More about it in the new #preprint from the @biothingsapi team: biorxiv.org/content/10.1101/…
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The BioThings SDK has been used to build APIs like the ones used by @DiseaseOutbreak. Learn more about it from the new #preprint biorxiv.org/content/10.1101/…
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Want to build your own biomedical data API like @mygeneinfo? Read about the BioThings SDK in our new #preprint on #biorxiv_bioinfo. #FAIRdata biorxiv.org/content/10.1101/…

BioThings SDK: a toolkit for building high-performance data APIs in biomedical research

Summary To meet the increased need of making biomedical resources more accessible and reusable, Web APIs or web services have become a common way to disseminate knowledge sources. The BioThings APIs...

biorxiv.org
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The Data Discovery Engine and Schema Playground are natural extensions of the BioThings #bioinformatics tools ecosystem. Learn more about them from our new #preprint doi.org/10.1101/2021.09.02.4…
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BioThings API retweeted
Sam Strom, PhD FACMG 💪🧬@stromulus
7 Sep 2021
Hi @chunleiwu! I used MyGene.info API today. It's a super helpful tool, thanks for making it and for writing good instructions. I used it to grab Entrez # for a few hundred gene symbols. Went from "what's this tool?" to results in about 10 minutes. #Bioinformatics

MyGene.info | Gene Annotation as a Service.

Gene Annotation as a Service.

mygene.info
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BioThings API retweeted
Chunlei Wu@chunleiwu
8 Sep 2021
Replying to @stromulus
🚀@stromulus that's awesome to hear! In case it's useful, our @biothings team made available other APIs like @myvariantinfo @mycheminfo @mydiseaseinfo too, in addition to @mygeneinfo :-)
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BioThings API retweeted
DiseaseOutbreak@DiseaseOutbreak
17 Mar 2021
NEW #variant surveillance tool from @cvisb @scrippsresearch: Search by location to find #SARSCoV2 lineage & mutation prevalence in any country, state, or region at outbreak.info/location-repor… #COVID19 #opendata
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BioThings API retweeted
Scripps Research Translational Institute@ScrippsRTI
17 Feb 2021
A new #SARS_CoV_2 mutation situation report feature is now available on outbreak.info. The tool is a collaborative effort by members of the labs of @K_G_Andersen @andrewsu & @chunleiwu at @scrippsresearch scripps.edu/news-and-events/…
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BioThings API retweeted
DiseaseOutbreak@DiseaseOutbreak
16 Dec 2020
All #COVID19 and #SARSCoV2 data is available via #opensource API, built using @biothingsapi Try it: api.outbreak.info/
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BioThings API retweeted
MyVariant.info@myvariantinfo
4 Feb 2021
OncoPDSS: an evidence-based clinical decision support system for #oncology pharmacotherapy at the individual level pubmed.ncbi.nlm.nih.gov/3277…

OncoPDSS: an evidence-based clinical decision support system for oncology pharmacotherapy at the...

OncoPDSS can serve as both an integrative knowledge base on cancer precision medicine, as well as a clinical decision support system for cancer researchers and clinical oncologists. It receives...

pubmed.ncbi.nlm.nih.gov
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BioThings API retweeted
MyGene.info@mygeneinfo
3 Feb 2021
iGMDR: Integrated #Pharmacogenetic Resource Guide to Cancer Therapy and Research pubmed.ncbi.nlm.nih.gov/3291…

iGMDR: Integrated Pharmacogenetic Resource Guide to Cancer Therapy and Research - PubMed

Current pharmacogenetic studies have obtained many genetic models that can predict the therapeutic efficacy of anticancer drugs. Although some of these models are of crucial importance and have been...

pubmed.ncbi.nlm.nih.gov
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BioThings API retweeted
KT Pickard 💉x 5@kt_pickard
31 Oct 2020
See @mygeneinfo Overview: elastic.co/blog/uncoiling-da… Slides: slideshare.net/mobile/anewge…
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The API was built using our #BioThings #SDK
DiseaseOutbreak@DiseaseOutbreak
20 Oct 2020
Looking for #Clinicaltrials , research papers, #datasets, and more on #COVID19? Try our new tool (we also have APIs). #opendata #metadata outbreak.info/blog/outbreak-…
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