Detecting copy number variations (CNV) in whole genome sequencing (WGS) data. Successor of CNVnator. #python #abyzovlab #CNVpytor #CNV #cnvnator
Joined February 2020
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pytor update !! thanks to @igvteam, both igv.js and igv-webapp now support pytor files, making it easier to visualize your data. Check out igv.org/app to try it out using a pytor file.
See: github.com/igvteam/igv.js/wi…
#igv #pytor #cnvpytor #cnv
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CNVpytor retweeted
Mayo Clinic genomics researcher, Alexej Abyzov, Ph.D., has been selected to receive a grant under the @NIH_CommonFund. He'll investigate a hybrid approach for comprehensive mutation detection in a cell. Learn more: mayocl.in/42Afz5G
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CNVpytor is used in this study.
In a recent study, a collaborative team of researchers investigated the CRISPR-Cas9 system, and recommended these steps to improve its accuracy: mayocl.in/44QG5t7
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CNVpytor was used for mosaic CNV discovery in just published Science paper:
[Taejeong Bae et al, Analysis of somatic mutations in 131 human brains reveals aging-associated hypermutability, DOI: 10.1126/science.abm6222]
science.org/doi/10.1126/scie…
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CNVpytor retweeted
22 Nov 2021
CNVpytor: a tool for copy number variation detection and analysis from read depth and allele imbalance in whole-genome sequencing. With a modular architecture allows it to be used in shared and cloud environments such as @GoogleColab and @ProjectJupyter academic.oup.com/gigascience…
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CNVpytor retweeted
21 Nov 2021
CNVpytor: a tool for copy number variation detection and analysis from read depth and allele imbalance in whole-genome sequencing. #CNVs #WGS #Bioinformatics academic.oup.com/gigascience… @GigaScience
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Great updates form T2T Consortium:
The complete sequence of a human genome biorxiv.org/content/10.1101/…
Awesome web collection of awesome genome visualization tools by @cmdcolin :)
Thanks for listing CNVpytor.
cmdcolin.github.io/awesome-g…
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Visualize read depth and BAF likelihood from VCF using CNVpytor JBrowse plugin.
Demo link hosted on Github abyzovlab.github.io/CNVpytor…
#cnvpytor #JBrowse
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Gave this a whirl earlier today, very easy to get the initial setup working and some preliminary tests are promising
28 Jan 2021
CNVpytor: a tool for CNV/CNA detection and analysis from read depth and allele imbalance in whole genome sequencing biorxiv.org/cgi/content/shor… #bioRxiv
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Discover and analyze copy number variations using CNVpytor as command line tool. Read our preprint for more details: biorxiv.org/content/10.1101/…
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CNVpytor retweeted
28 Jan 2021
CNVpytor: a tool for CNV/CNA detection and analysis from read depth and allele imbalance in whole genome sequencing biorxiv.org/cgi/content/shor… #bioRxiv
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