scientist studying biology with computers
Joined March 2008
- Tweets 1,869
- Following 1,133
- Followers 400
- Likes 5,615
36 Photos and videos
Our paper on RA Macrophages is now online at @ScienceTM! stm.sciencemag.org/content/1… Very grateful to mentors at @HSpecialSurgery > Ivashkiv and Donlin Labs and @csatet > @gxr @gxrlab; collaborators @FanZhang_Jessie and @soumya_boston and many others
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15 May 2024
Indexing All Life's Known Biological Sequences biorxiv.org/content/10.1101/… metagraph.ethz.ch/search
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dkuo retweeted
9 Oct 2023
Are you wrestling with this missing data pattern? While single-cell experiments provide deep cellular resolution within a single sample, bulk experiments have sequenced more (rare) diseases, perturbations, and patient populations. BuDDI is here to help! biorxiv.org/content/10.1101/…
ALT large square is broken into four subsquares, with the bottom right subsquare missing. the rows represent a technology and the columns represent pre- or post-treatment. The squares indicate that there is information for bulk and single-cell pre-treatment, but only bulk post treatment.
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12 Sep 2023
Aaron Rodgers entering his darkness retreat again
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28 Jul 2023
A rewarding team effort to define how T cell activation by checkpoint therapy can result in an INDUCIBLE HUMAN AUTOIMMUNE CONDITION - which resembles rheumatoid arthritis.
28 Jul 2023
A new study by @SingarajuAnvita @KB_PhD @Deepakarao @Donlinlab and colleagues identifies a T cell population as a reason for why some types of immune checkpoint inhibitor immunotherapies can cause arthritis to emerge in some patients.
📄: scim.ag/3wO
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22 Feb 2023
🧬💻🔥 We are excited to launch #CuratedAtlasQueryR! millions of cells at your fingertips. A thread 🧵.
The harmonized and reannotated #CELLxGENE #singlecell human #atlas can be
explored and retrieved as #SingleCellExperiment. Please RT!
-> stemangiola.github.io/Curate…
ALT Cartoon of the structure, content and use of the CuratedAtlasQueryR API. It uses #CELLxGENE data, #DuckDB infrastructure, #tidyverse API
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9 Feb 2023
This paper is finally out in eLife! The process of getting published was exhausting, but I feel refreshed after submitting to eLife. It got very insightful reviews you can all enjoy! Still working on a response, but since it's eLife you can see them now!
elifesciences.org/reviewed-p…
22 Jun 2021
Happy to share our new @bioarxiv pre-print “Analysis of scientific journalism in Nature reveals gender and regional disparities in coverage”
We analyzed the text of 22,001 news articles to see if we observed any disparities (spoiler: we did)
biorxiv.org/content/10.1101/…
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ALT barplot containing the number of nature news or research articles from 2005 to 2020. Each bar for a single year is stacked to show the breakdown by article type. The most frequent type is "news" followed by "research". The total number of articles varies from over 2000 in 2005 and steadily decreasing over time, with more than 1500 articles in 2020.
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4 Nov 2022
Our recent work on sequence-to-graph alignment in metagenomics using longer inexact seeds biorxiv.org/content/10.1101/…
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5 Oct 2022
Congrats to my former @Harvard bandmate @CarolynBertozzi on her @NobelPrize in chemistry! We won the Ivy League Battle of the Bands in 1986 with our rockin’ group ‘Bored Of Education’, with her on keyboards & me in spandex. news.stanford.edu/2022/10/05…
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cc @kwangbom ;)
3 Jul 2022
This blue Lobster was caught off the coast of Portland yesterday and returned to the water to continue to grow. Blue lobsters are one in two million.
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Barcodes, barcodes everywhere @carroll_jono
29 Jun 2022
This deck of cards has a bar code printed on the edge of each card. Scanning these bar codes would reveal where every card is (or isn't - if cards are missing.)
Think card magic.
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ALT A deck of cards with digital marks printed on the edge of each card.
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Thought this was about @JuliaLanguage ....
10 Jun 2022
For your consideration - #Julia - the Max Original Comedy Series that Decider raves is “Heartwarming & Delicious”
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Do you remember when you joined Twitter? I didn't until Twitter reminded me. #MyTwitterAnniversary
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dkuo retweeted
29 Nov 2021
Finally out in @NatureRevGenet: Navigating the pitfalls of applying machine learning in genomics! go.nature.com/3D55JuZ w/ @seawhalen et al.
Our key point: you MUST evaluate your models in the same setting you want them to be used or they might not actually work in practice.
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17 Nov 2021
I was telling my students today about how Derrick Bell left Harvard Law because they refused to hire any women of color.
I asked my class if they knew who was the first woman of color they hired.
I tried to keep a straight face then my TA BUST out laughing. 🤣🤣🤣
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dkuo retweeted
We launched our lab website over the weekend: lehmannlab.org/
Check it out especially the upcoming open PhD/Postdoc opportunities! #hiring #AcademicTwitter
Also big thanks to our webmaster (@joyceykao) for designing the lab logos and building the website!
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The lab is open for business and we are #hiring!!!
If the analysis and method development of multi-modal biomedical data with a focus on oncology sounds interesting to you, check out the ad and apply online:
bit.ly/LehmannLabPostDoc
#MachineLearning #CancerResearch
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