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Erick Armingol @eagut

Chileno 🇨🇱 - @MSCActions Postdoctoral Fellow at @sangerinstitute VenToLab.org - PhD in Bioinformatics from @UCSanDiego @LewisLabUCSD

Joined July 2007
  • Tweets 713
  • Following 684
  • Followers 432
48 Photos and videos
Erick Armingol retweeted
Nathan Lewis@Nathan_E_Lewis
Feb 26
Check out our latest work on inferring metabolite-protein-mediated cell-cell communication. Led by @eagut doi.org/10.1093/bioinformati…
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Erick Armingol@eagut
20 Jul 2025
I’ll be talking at the #ISMBECCB2025 about scCellFie and how we can use single-cell and spatial transcriptomics to study metabolism. If you are interested, join the #SysMod COSI on Tue 22th at 5pm (room 01C) 🙌
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Erick Armingol retweeted
Hana Aliee@hana_aliee
18 Jun 2025
3/ If you'd like to work on the vibrant, collaborative and world-class Cambridge Biomedical Campus @CamBioCampus, apply here: jobs.cam.ac.uk/job/51721/ Read more about our research topics here: cruk.cam.ac.uk/research-grou…

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Erick Armingol retweeted
Hana Aliee@hana_aliee
18 Jun 2025
I'm honoured to join @CRUK_CI and @Cambridge_Uni as a Junior Group Leader of AI for Cancer. My group will focus on reasoning, multimodality, hypothesis-making, and more to decode disease and health. A few positions are opened — consider applying to outsmart cancer together!
CRUK Cambridge Institute@CRUK_CI
17 Jun 2025
We are delighted to welcome @hana_aliee to the Institute. She joins as a Junior Group Leader and will lead her team in developing AI models to understand the molecular mechanisms driving health and disease. Find out more: cruk.cam.ac.uk/news/dr-hana-…
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Erick Armingol@eagut
15 May 2025
I’m happy to share that our scCellFie manuscript is finally on bioRxiv — a project that was an amazing opportunity to return to my roots in metabolism! We infer metabolic activity from single-cell & spatial transcriptomics 🧬 Read the pre-print here👇 📄 doi.org/10.1101/2025.05.09.6…
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Erick Armingol@eagut
15 May 2025
🧱 In endometrial carcinoma, scCellFie revealed: • Spatially organized metabolic activities • Tumor-associated estrogen & kynurenine signaling • Metabolic tasks linked to tumorigenesis potential #CancerResearch #SpatialTranscriptomics #SpatialBiology
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Erick Armingol@eagut
15 May 2025
🔗 Find out more 📄Preprint: doi.org/10.1101/2025.05.09.6… 💻GitHub: github.com/earmingol/scCellF… 📚Tutorials: sccellfie.readthedocs.io/ 🤝 Thanks to the Vento Lab and all collaborators! We hope scCellFie supports your exploration of metabolism in health & disease 🧪 #Metabolism
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Erick Armingol retweeted
Mo Lotfollahi
@mo_lotfollahi
18 Mar 2025
(1/n) The first preprint from our lab is now out in @NatureGenet! We tried to tackle a key challenge in spatial biology to quantitatively characterizing cellular niches by learning spatial gene programs using NicheCompas led by @SebastianBirk_. Paper: shorturl.at/b4Hjk
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It’s great to finally see this published, and now with experimental validations! Congrats @cameronmartino and the team. Happy to be part of the long list of co-authors 😆
cameron martino@cameronmartino
26 Feb 2025
🔥 Finally published in @mbiojournal! An update from the 2020 pre-print: “SARS-CoV-2 infectivity can be modulated through bacterial grooming of the glycocalyx.” 🔗journals.asm.org/doi/10.1128… 🧵👇
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Erick Armingol retweeted
Nature Reviews Genetics@NatureRevGenet
25 Nov 2024
Methods for studying cell–cell interactions and communication go.nature.com/491i6Zi #Review by @eagut, @hmbaghdassarian & @Nathan_E_Lewis @LewisLabUCSD @UCSanDiegoCPD
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Erick Armingol retweeted
James Ashcroft@JamesAshcroftMD
17 Sep 2024
Arrived at the European Conference on Computational Biology in Turku, Finland! 🇫🇮 @eagut Sarah Teichmann opens on the future of human cell atlases #ECCB2024 #ComputationalBiology @UniTurku @ECCBinfo @sangerinstitute
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Nature Portfolio
@NaturePortfolio
4 Sep 2024
A study in @NatureMedicine finds generally larger brain-age gaps in Latin American compared with non-Latin American populations, which were influenced by disparities in socioeconomic and health-related factors. go.nature.com/3MoyLg3
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Amazing work led by @HassanMassalha !
Hassan Massalha@HassanMassalha
2 Sep 2024
Excited to share our new preprint: 'A Developmental Cell Atlas of the Human Thyroid Gland' on biorxiv.org/content/10.1101/…! We uncover the diversity of thyrocytes throughout lifespan, offering insights into #thyroid development in health & disease… 👇
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Erick Armingol@eagut
23 Aug 2024
Small details that make your day! 😊 ~6 years after my first paper came out 🥳
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As a big fan of tensor factorization, I’d like to share these two preprints from @aarmey ‘s group! Useful methods in single cell 🎉 biorxiv.org/content/10.1101/…

Integrative, high-resolution analysis of single cells across experimental conditions with PARAFAC2

Effective tools for exploration and analysis are needed to extract insights from large-scale single-cell measurement data. However, current techniques for handling single-cell studies performed...

biorxiv.org
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biorxiv.org/content/10.1101/…

Censored Least Squares for Imputing Missing Values in PARAFAC Tensor Factorization

Tensor factorization is a dimensionality reduction method applied to multidimensional arrays. These methods are useful for identifying patterns within a variety of biomedical datasets due to their...

biorxiv.org
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