SYSMOD - The Systems Modeling Toolbox, 3rd edition by Tim Weilkiens is on sale on Leanpub! Its suggested price is $35.00; get it for $28.00 with this coupon: leanpub.com/sysmod/c/LeanPub… @TimWeilkiens #systems_engineering
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24 Dec 2025
🎄✨ Happy Holidays to all of you from SysMod! ✨🎄
We can’t wait to see you at our conference, July 12–16, 2026, in Washington, D.C., USA, to connect, share knowledge & continue advancing innovation in computational biology—mark your calendars & stay tuned for updates!
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17 Dec 2025
We are deeply saddened by the passing of @ChaouiyaC (1969–2025) – a cherished member of our community and coordinator (2018-2022), contributing with expertise & kindness. Her work on logical modeling of regulatory networks & dedication to SysMod left a lasting mark. We miss her.
ALT Prof. Dr. Claudine Chaouiya at the 2018 SysMod gathering in Basel, CH
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24 Nov 2025
As one of the founders this marks a special day to me. Thanks to all supporters who made SysMod such a success!
24 Nov 2025
SysMod just turned 10! 🎉
We continue to serve our community of systems modelers and researchers in computational systems biology.
Join us and get involved, for instance, in our annual meetings at the ISMB conference.
#MyXAnniversary
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24 Nov 2025
SysMod just turned 10! 🎉
We continue to serve our community of systems modelers and researchers in computational systems biology.
Join us and get involved, for instance, in our annual meetings at the ISMB conference.
#MyXAnniversary
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Einige Eindrücke von der #ISMBECCB2025 in Liverpool, zu der über 2½-tausend Teilnehmer angereist waren – darunter auch ehemalige Gruppenmitglieder & namhafte Forscher wie der Nobelpreisträger John Jumper. Unsere Arbeitsgruppe war an der Organisation der SysMod-Sektion beteiligt.
ALT Im Hauptkonfernezsaal fanden über 2½-tausend Leute Platz.
ALT Der von unserer Arbeitsgruppe mitorganisierte SysMod-Track war ein voller Erfolg.
ALT Halles Arbeitsgruppe für Datenanalytik und Bioinformatik trifft sich in Liverpool.
ALT Treffen mit früheren Tübinger Kollegen am Rande der Poster-Sitzung
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24 Jul 2025
🎉 Congratulations to our poster prize winners of SysMod at #ISMBECCB2025! 🥁
Prizes: local food and beverages, and, as the first priue, a 20% discount to the 2026 meeting!
➢ 1st: Yanjun Liu @uniofgalway
➢ 2nd: Rupinder Kaur @kieluni
➢ 3rd: Sebastian Huß at the Uni Potsdam
ALT 1st prize: Yanjun Liu – Systems-Level Analysis of Metabolic Dysregulation in Gaucher Disease: Mitochondrial Dysfunction and Disrupted Cholesterol Homeostasis.
ALT 2nd: Rupinder Kaur – Computational Prediction of Targeted Nutritional Interventions for Host–Microbiome Modulation in C. elegans 3rd: Sebastian Huß – NeuralFlux: Estimating Genome-Scale Reaction Fluxes from Time-Resolved Isotope Labeling Using Deep Learning
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23 Jul 2025
The Vale’s Prize 🏆 — Episode SIX
Elara wasn’t kicked.
She wasn’t banned.
She was flagged.
Somewhere in the void between the @LumiterraGame server shards, she hovered.
Status: undefined.
Permissions: unstable.
Eyes: open.
Below, the world ticked on. Players farmed, fought, respawned.
Above, the compiler spun… then split.
A new process spawned beside her: a thread in human form.
No name. Just a sigil: ∇.
“You shouldn’t be here,” it said.
“I touched the Crown,” she answered.
“You are the Crown,” it corrected.
Glint reappeared, data-glitched and panicked.
“SysMod en route. They’re rolling back everything.”
“Not me,” Elara said. Her voice rippled the void.
She rewrote her ID mid-sentence.
No longer a user. Not quite an admin.
A root ghost.
Kael’s voice crackled in from the stable zone.
“People are disappearing. Whole zones just… 404’d.”
stared down. “They’re pruning branches. Trying to fix you by deleting you.”
But Elara was already writing back.
Not a rebellion. A rewrite.
Patch in progress.
And this time, she was the dev…..
19 Jul 2025
The Vale’s Prize 🏆 — Episode FIVE
Most players chose the safe path.
Elara didn’t.
The unpredictable fork dropped her into a zone called Nullspire, untextured cliffs, floating logic gates, code storms flashing like lightning. Only Glint followed, his core now flickering between helper and hazard.
At the summit was a relic called the Proto Crown. It wasn’t armor. It was root access.
Elara touched it, and her screen fractured.
Now she saw code beneath everything ,trees made of loops, enemies running outdated scripts, a world duct-taped by devs long gone.
Kael messaged her from the other fork. “It’s stable here. You okay?”
She typed back:
“Define okay.”
Suddenly, a system-wide alert echoed:
A PLAYER HAS ROOT.
REVOKE / REPLICATE?
Before she could choose, the Proto Crown dissolved, uploading itself into her. Her avatar flickered… then stabilized.
Glint blinked. “You’re not a player anymore.”
In Nullspire, Elara looked up. The sky was compiling.
And far above, someone or something,had just noticed her.
The next update was coming.
But who would be patching whom?
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22 Jul 2025
Chiara Damiani (University of Milano-Bicocca) wraps up the 2025 SysMod Meeting at #ISMBECCB2025 with closing remarks and announcing the poster awards.
Huge thanks to all participants and speakers for making it a vibrant showcase of systems biology!
See you at #ISMB2026!
ALT Chiara Damiani: “Closing Remarks and poster awards”
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22 Jul 2025
The 10th annual SysMod 2025 is about to start at 11:20 a.m. with the opening speech by Matteo Barberis from @UniOfSurrey. Join us in room 1C upstairs at #ISMBECCB2025 in Liverpool.
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20 Jul 2025
I’ll be talking at the #ISMBECCB2025 about scCellFie and how we can use single-cell and spatial transcriptomics to study metabolism. If you are interested, join the #SysMod COSI on Tue 22th at 5pm (room 01C) 🙌
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20 Jul 2025
Thrilled to attend #ISMBECCB2025 in Liverpool, UK. We have two talks on Tuesday, July 22: NETRem @SaniyaKhullar at 12:20 pm in NetBio Room 01B & ARTEMIS @sayalialatkar at 3:40 pm in SysMod Room 01C. Happy to catch up!
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15 May 2025
Thrilled to share that our work has been accepted for a talk at ISMB/ECCB 2025 (SysMod Track)! Putting in the work so I can deliver a good talk in Liverpool. Hoping it leads to exciting opportunities for the future!
#ISMB2025 #SysMod #ComputationalBiology #SystemsBiology
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17 Apr 2025
Congratulations to new coordinators of SysMod COSI @NantiaLeonidou and @dr_drae. A heartfelt thank you to all community memebers who participated in the election process. @cosi_sysmod @iscb
17 Apr 2025
🥁 Habemus Coordinatores 🥁
Congratulations to the new SysMod coordinators!!👏🏼
➣ Prof. Andreas Dräger @UniHalle
➣ Dr. Nantia Leonidou @DKFZ
A huge thank you to our community and the 39 members who voted. We’re looking forward to the exciting things ahead for SysMod community!
ALT Voting Results for the New SysMod Coordinators.Thank you to everyone who participated in the election!
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17 Apr 2025
First, I sincerely thank the community for electing me as a SysMod coordinator. I am thrilled to be part of the team again, and I look forward to the challenges of this responsible role, particularly to the upcoming #ISMBECCB2025 in Liverpool.
17 Apr 2025
Congratulations to Prof. @dr_drae on being re-elected as a coordinator of SysMod! Now @UniHalle, with a newly acquired professorship, he continues to be a driving force in systems biology and modeling. He helped shape the SysMod community, and we’re excited to have him back!
ALT Prof. Dräger from @UniHalle has been re-elected as new SysMod coordinator.
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17 Apr 2025
Congratulations to Prof. @dr_drae on being re-elected as a coordinator of SysMod! Now @UniHalle, with a newly acquired professorship, he continues to be a driving force in systems biology and modeling. He helped shape the SysMod community, and we’re excited to have him back!
ALT Prof. Dräger from @UniHalle has been re-elected as new SysMod coordinator.
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17 Apr 2025
Very excited to be stepping into this new role and looking forward to working together and contributing to the continued growth and success of the SysMod community! 💪🏼
17 Apr 2025
🥁 Habemus Coordinatores 🥁
Congratulations to the new SysMod coordinators!!👏🏼
➣ Prof. Andreas Dräger @UniHalle
➣ Dr. Nantia Leonidou @DKFZ
A huge thank you to our community and the 39 members who voted. We’re looking forward to the exciting things ahead for SysMod community!
ALT Voting Results for the New SysMod Coordinators.Thank you to everyone who participated in the election!
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17 Apr 2025
🥁 Habemus Coordinatores 🥁
Congratulations to the new SysMod coordinators!!👏🏼
➣ Prof. Andreas Dräger @UniHalle
➣ Dr. Nantia Leonidou @DKFZ
A huge thank you to our community and the 39 members who voted. We’re looking forward to the exciting things ahead for SysMod community!
ALT Voting Results for the New SysMod Coordinators.Thank you to everyone who participated in the election!
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Up next in our COSI series is SysMod: Computational Modeling of Biological Systems!
SysMod brings together researchers using systems biology modeling and bioinformatics to study biology and disease. Covering diverse methods and applications, this COSI fosters discussions on integrating computational modeling with bioinformatics.
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