2 Apr 2021
"Bioinformatics tools developed to support BioCompute Objects"
New #BioComputeObject Tools paper in @biocurator's #openaccess journal Database discussing #BCO on Cloud-based platforms: HIVE, Cancer Genomics Cloud (CGC) and @galaxyproject ,
academic.oup.com/database/ar…
#BioCompute
![Figure 3. User BCO training process.
The BioCompute training unit (1) introduced participants to the concept of BioCompute, (2) offered hands-on exercises with two genome analysis platforms (HIVE and CGC), (3) familiarized participants with a prominent literature resource (PubMed), (4) introduced the concept of data sources [through the OncoMX knowledgebase (https://www.oncomx.org/)], (5) described the process of finding a suitable publication with an associated open source pipeline, (6) introduced the JSON language as a suitable segue into training users on the BCO Portal (previously BCO Editor) and (7) provided users with a Q&A opportunity prior to final submission of BCOs to the precisionFDA BCO App-a-thon.](https://venexa.site/media/Ex9yoiTW8Aoj6Dd.jpg)
ALT Figure 3. User BCO training process. The BioCompute training unit (1) introduced participants to the concept of BioCompute, (2) offered hands-on exercises with two genome analysis platforms (HIVE and CGC), (3) familiarized participants with a prominent literature resource (PubMed), (4) introduced the concept of data sources [through the OncoMX knowledgebase (https://www.oncomx.org/)], (5) described the process of finding a suitable publication with an associated open source pipeline, (6) introduced the JSON language as a suitable segue into training users on the BCO Portal (previously BCO Editor) and (7) provided users with a Q&A opportunity prior to final submission of BCOs to the precisionFDA BCO App-a-thon.
7
7
23 Nov 2020
Our new #BioCompute documentation site is now live!
Visit docs.biocomputeobject.org/ for #BioComputeObject User Guide, Best Practices, and BioCompute Curation SOP.
All content is created via github.com/biocompute-object…. Contributions welcomed as pull request or issue.
1
2
18 Nov 2020
Really great example incorporating a @Docker image in a #BioComputeObject for a bioinformatics pipeline. This pipeline carries out image classification using convolutional neural networks, based on Hung et al.
#DeepLearning #Python #keras
portal.aws.biochemistry.gwu.…
3
10
9 Nov 2020
Kudos to @intelliseq for their finalist entry and gold medals for functionality, documentation, and usability/aesthetic in the Advanced Track of the #biocomputeobject Challenge!
intelliseq.com/intelliseq-re…
2
3
GW-led Consortium Receives $2.2M Grant to Fund #BioComputeObject Specification Project bit.ly/2sLSr8i cc: @rmazumde @NeuroGenomics @HadleyKingIV
1
6
14 May 2019
Robert Chu talking about Using #BiocomputeObjects to organize healthcare marketplace building a Patient-driven Clinical Data Exchange
#BioCompute2019 #bioinformatics #biocomputeobject #NGS
finance.yahoo.com/news/bioco…
1
14 May 2019
@JPat1546 talking about error message generation in the open source #BioComputeObject editor at #BioCompute2019.
github.com/biocompute-object…
2
14 May 2019
Thrilled to support this incredibly important effort to empower individuals to take control of their own genetic data.
#BioCompute2019 #bioinformatics #biocomputeobject #NGS
finance.yahoo.com/news/bioco…
2
14 May 2019
1
1
14 May 2019
"Putting processes in place can be a huge burden if you're not following best practices. I work with people who couldn't tell you what they did last week."
- Dennis Dean
#BioCompute2019
#bioinformatics
#biocomputeobject
1
2
14 May 2019
"Previous regulatory decisions were made based on the presence of isolates. I think that regulatory decisions are going to be made based on #NGS data in the future."
- Errol Strain
#BioCompute2019
#bioinformatics
#biocomputeobject
3
4
10 May 2019
Really cool to see the growth of this project over the past few years, but can't take any credit. Good job, #BioComputeObject team! #ProudLabmate #DataProvenance
6 May 2019
Still some spots for the 4th annual BioCompute workshop. This year's talk at the FDA includes discussion panel with the FDA's Genomics Working Group, use case examples, integrating BioCompute into tools, and a BCO Challenge on @precisionfda
Register at: bit.ly/2DHVJvF
2
Don't forget to register for #biocompute2019, co-sponsored by #GWU and @US_FDA! The May 14 workshop, building on nearly 5 years of collaborative work, will be held at the FDA White Oak campus: bit.ly/2Y5YcrO #biocomputeobject
1
3