Now that along with synthetic patient data, we'll play a crucial role in their infection game.
Evaluating Synthea: Comprehensive
Analysis of a Leading Synthesized Medical Record Generator
ohdsi.org/wp-content/uploads…
A 1,162,848 person sample of Synthea data was generated using version 2.7 of the tool.
The only parameter given at the time of generation was that the patients should all be modeled from the state of California.
The sample was then converted to the Observational
Medical Outcomes Partnership Common Data Model (CDM) using the ETL-Synthea R
package version 1.0.
General database characterizations were generated using the Achilles R package version 1.7.
ETL-Synthea R Package
A package supporting the conversion from Synthea CSV to OMOP CDM.
github.com/ohdsi/ETL-Synthea
Docs
ohdsi.github.io/ETL-Synthea/
Achilles R Package
Automated Characterization of Health Information at Large-scale Longitudinal Evidence Systems (ACHILLES) - descriptive statistics about a OMOP CDM database.
github.com/ohdsi/Achilles
Docs
ohdsi.github.io/Achilles/
This will also be used for the merger aka BioDigital Convergence.
Here's how we know synthetic gene integration for synthetic gene networks is crucial and a part of the foundation for the new upcoming system.
Inferno HealthIT
FHIR Gene Integration
FHIR (Fast Healthcare Interoperability Resources) is being used to integrate synthetic gene data into clinical systems, enabling the standardization and interoperability of genomic information.
The HL7 Clinical Genomics Work Group is developing standards for reporting structured genomic data using FHIR, which is crucial for accelerating the integration of precision medicine and making sense of genetic testing results in a complete clinical context.
Synthea, a synthetic patient population simulator, outputs patient records in FHIR formats, generating realistic but not real patient data and associated health records.
This data can be used to support the development and testing of health IT systems, including those that handle genomic data.
Sync for Genes, a project launched in 2017, aims to standardize the sharing of genomic information among laboratories, providers, patients, and researchers. It advances the development and use of industry-supported standards for sharing and integrating genomic information, such as via FHIR. The project includes phases that demonstrate the exchange of genomic test results and the integration of genomic data generated by laboratories into clinical systems.
The use of FHIR for genomics also facilitates pharmacogenomics by allowing healthcare providers to access detailed pharmacogenomic reports that guide medication selection and dosage based on a patient's genetic profile.
FHIR is being utilized to standardize and simplify the exchange of clinical genomic data, allowing healthcare providers to efficiently integrate and analyze genetic information within EHRs, thereby enhancing personalized treatment plans and clinical decision-making.
Genomics in FHIR
The era of precision medicine-- an emerging approach for disease treatment and prevention that takes into account individual variability in genes, environment, and lifestyle for each person is upon us.
hl7.org/fhir/genomics.html
HealthIT (Inferno)
Sync for Genes
Sync for Genes, launched in 2017, aims to standardize the sharing of genomic information among laboratories, providers, patients, and researchers.
The project advances the development and use of industry-supported standards for the sharing and integration of genomic information in a consistent and usable way.
healthit.gov/topic/sync-gene…
Synthetic Patient Population Simulator
synthetichealth.github.io/sy…
CodeCov
app.codecov.io/gh/synthetich…
SyntheaTM is a Synthetic Patient Population Simulator. The goal is to output synthetic, realistic (but not real), patient data and associated health records in a variety of formats.
github.com/synthetichealth/s…
Project Genome X - FHIR
confluence.hl7.org/spaces/CO…