12/24 ๐๐ฒ๐ป๐ฐ๐ต๐บ๐ฎ๐ฟ๐ธ๐ถ๐ป๐ด ๐ฃ๐ฎ๐๐ต๐ผ๐น๐ผ๐ด๐ ๐๐ผ๐๐ป๐ฑ๐ฎ๐๐ถ๐ผ๐ป ๐ ๐ผ๐ฑ๐ฒ๐น๐ ๐ณ๐ผ๐ฟ ๐ฆ๐ฝ๐ฎ๐๐ถ๐ฎ๐น ๐๐ผ๐บ๐ฎ๐ถ๐ป ๐จ๐ป๐ฑ๐ฒ๐ฟ๐๐๐ฎ๐ป๐ฑ๐ถ๐ป๐ด
This paper introduces SpaPath-Bench, a representation-level benchmark designed to diagnose spatial representation capability in Pathology Foundation Models (PFMs). It formulates spatial domain identification (SDI) on 42 public paired whole slide image and spatial transcriptomics data, evaluating 19 encoders and seven SDI methods using three complementary criteria. Across 83K runs, SpaPath-Bench reveals different pretraining paradigms capture distinct aspects of tissue spatial architecture, guiding the development of spatially aware computational pathology models. Code and data pipelines are available at
bokai-zhao.github.io/SpaPathโฆ.
#SpaPathBench #PathologyAI #ComputationalPathology #PFMs #SpatialBiology #RepresentationLearning #MedicalBenchmarks
Paper Link:
arxiv.org/abs/2605.25764