We are a User Facility providing access to integrative genome science capabilities. Located @BerkeleyLab. Work with us: jointgeno.me/proposals

Joined February 2009
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Don't miss the JGI's Microbial Genomics & Metagenomics Workshop at the Fisabio Summer School in Spain July 20–24. Register here (Module 4): redcap.fisabio.san.gva.es/su…
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A Pinch of Salt Activates Silent Gene Clusters in Streptomyces: This single environmental trigger highlights efficiency for users requiring multiple omics methods to examine microbial chemical production. More: jgi.doe.gov/user-science/sci…
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By leveraging new tools and large-scale data mining, JGI researchers nearly tripled the available fungal mitochondrial genome data, unlocking new potential for AI-driven studies of energy metabolism. More: jgi.doe.gov/user-science/sci…
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From our FY26 New Investigators: Brittany N. Zepernick will use DNA, RNA and metabolite profiles to connect environmental variability to microbial partnerships that regulate ecosystem function across seasons and storms. Full portfolio: jgi.doe.gov/user-science/sci…
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Genome Watch👀 "In search of phage tail-like particals: nature's versatile nanomachines" highlights the importance of predictive models. Read more in @NatureRevMicro: rdcu.be/fgU2m @BerkeleyLab
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From our FY26 New Investigators: By comparing sediment and vegetation effects at Great Meadows Marsh, Jing Yuan will clarify how microbial functions shape marsh health and long-term resilience. Full portfolio: jgi.doe.gov/user-science/sci…
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Many of our users rely on a multifaceted combination of genomic, transcriptomic, proteomic, phenotypic, metabolomic, imaging, sensor, and other data produced at scales amenable to statistical analysis. Learn more about our resources: jgi.doe.gov/work-with-us/off…
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From our FY26 New Investigators: Susanne Wilken will sequence chrysophyte genomes to explain how these algae use light and prey to grow, supporting efforts to optimize strains for bioenergy. Full portfolio: jgi.doe.gov/user-science/sci…
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From our FY26 New Investigators: By testing kelp across temperatures and life stages, Brooke Weigel will identify gene pathways linked to physiological performance and stress resilience. Full portfolio: jgi.doe.gov/user-science/sci…
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From our FY26 New Investigators: Chin Chin Too will characterize peatland microbial communities across pristine and burnt conditions, linking gene profiles to methane production and consumption rates. Full portfolio: jgi.doe.gov/user-science/sci…
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The Primer goes out every other month and includes updates on user research, upcoming events, proposal recipients and other opportunities. Stay in touch! Sign up at jointgeno.me/newsletter
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From our FY26 New Investigators: By comparing genomes, Jennifer E. Smith will connect genetic differences to adaptation and the biosynthesis of valuable halogenated compounds. @LizZhou9 @Scripps_Ocean @UCSanDiego Full portfolio: jgi.doe.gov/user-science/sci…
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From our FY26 New Investigators: By combining metabolite measurements with transcriptomics, Rebecca Sherbo will identify how cells coordinate energy-intensive processes without damaging sensitive enzymes. Full portfolio: jgi.doe.gov/user-science/sci…
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Sorghum Pangenome Opens Doors: "We wanted to build a resource that demonstrates DNA sequence diversity, gene repertoire, and the phenotypic diversity across this plant in one accessible resource." — John Lovell, JGI Plant Program @CABBIbio More: jgi.doe.gov/user-science/sci…
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From our FY26 New Investigators: Leading two sorghum projects, @NadiaShakoor will generate deep-soil DNA maps and a time-resolved activity dataset to support improved productivity and resilience. @DanforthCenter Full portfolio: jgi.doe.gov/user-science/sci…
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Check out Genome Insider, the JGI’s podcast. Hear directly from users about how the JGI supports powering our future. Listen and follow on Apple, Spotify or wherever you find podcasts. More: jointgeno.me/GenomeInsider
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From our FY26 New Investigators: @Haleys_Comments will use new sampling and DNA extraction to uncover hidden microbial diversity in cold springs, connecting metagenomic data to functional analyses. Full portfolio: jgi.doe.gov/user-science/sci…
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From our FY26 New Investigators: Via gene data analysis, @MSakuma8 will predict urease variants with improved activity and stability. Enzymes will be synthesized, tested and optimized for scalable recovery systems. @tokuriki_lab @ubcmsl @IAE_KU More: jgi.doe.gov/user-science/sci…
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From our FY26 New Investigators: Through gene activity and microbial data integration, Reuben J. Peters will reveal how rice diterpenoids shape the plant microbiome, supporting healthier plants and improved yields. @IowaStateU Full portfolio: jgi.doe.gov/user-science/sci…
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📣 FUNGAL COMMUNITY🍄 Genomes recently released on Mycocosm include ambrosia fungus, entomortierella, zygopleurage, fusarium & phyllosticta. Find all of our publicly available fungal genomes at mycocosm.jgi.doe.gov/mycocos…

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