Joined February 2012
- Tweets 746
- Following 229
- Followers 241
- Likes 2,948
46 Photos and videos
Konstantin Zaitsev retweeted
6 May 2025
I'm happy to present our new web-tool CORESH alserglab.wustl.edu/coresh/ for searching public gene expression datasets using gene signature as a query, developed by @vd_sukhov, which was just published in @NAR_open doi.org/10.1093/nar/gkaf372 1/n
1
9
27
1,640
Konstantin Zaitsev retweeted
14 May 2024
I'm happy to share that out paper on Phantasus, a web-application for visual and interactive gene expression analysis, got out in @eLife elifesciences.org/articles/8… Here, I'm using it to analyze a random GEO dataset, including basic QC to filter outliers, in under 100 seconds! 1/n
2
34
131
26,633
16 Apr 2024
Happy to highlight recent preprint by @denis_kleverov, @AladyevaE, Alexey Serdyukov, and @maxim_artyomov
Sinkhorn transformation seems to be the key to much better solve general NMF and fits data into simplexes in both spaces
Read it and have feedback? - share with us!
15 Apr 2024
Happy to report major analytical advance in NMF/deconvolution - we topologically reformulated it as 𝐃𝐮𝐚𝐥 𝐒𝐢𝐦𝐩𝐥𝐞𝐱 problem, reducing it to just K(K-1) variables, K=# clusters/components.
works in scRNAseq/bulk deconvolution, image analysis etc
biorxiv.org/content/10.1101/…
1
1
6
476
16 Apr 2024
Also kinda cool to see that Sinkhorn transformation is such an easy procedure, and yet, Sinkhorn distances find more and more applications in optimal transport and machine learning
3
185
Konstantin Zaitsev retweeted
5 Mar 2024
Apparently, while studying for the midterm, my students memed my class. 💀
credit: @wrboohar
32
199
1,348
171,950
Konstantin Zaitsev retweeted
26 Feb 2024
All of Us failed. liorpachter.wordpress.com/20…
6
43
214
87,132
Konstantin Zaitsev retweeted
29 Jan 2024
I'm happy to finally announce that I'm joining @wusm_pathology and will be establishing a computational biology/immunology group here! I will be looking for students/postdocs interested in working with pathway/network analysis and large-scale public data repositories, so pls RT
A warm welcome to our newest faculty member, Dr. Alexey Sergushichev, who has joined our Immunobiology Division as Assistant Professor. Read more about Dr. Sergushichev and his research on our website: pathology.wustl.edu/people/a… #wusmpathimm @assaron
7
23
122
18,219
Konstantin Zaitsev retweeted
26 Dec 2023
СПб, нужна помощь. Срочно нужна донорская кровь для смешного и пушистого кота.
Цельная кровь 100 мл или R-масса 50 мл, группа А. Донор: вес >4 кг, возраст 2-6, без ожирения, без антибиотиков и вакцинации последний месяц. Оплачиваю всё: перекрестные анализы, такси, кровь.
4
100
115
16,829
Konstantin Zaitsev retweeted
4 Dec 2023
🔔 Join the #JetBrainsAI launch event online!
December 6, 5:00 pm (CET) | 8:00 am (PST)
Learn more about JetBrains AI and AI Assistant from the creators themselves.
👉jb.gg/aihere
4
73
148
44,418
30 Oct 2023
The paper where we get bit closer to solving monocyte -> foamy mac trajectory. Kudos to @Lab__Williams. It is very special to me in many ways:
It's just amazing to see the great work of @mfiruleva
Correspondence sign next to my name for the first time
nature.com/articles/s44161-0…
4
38
3,704
Konstantin Zaitsev retweeted
30 Oct 2023
Excited to share our new paper, Trem2 Promotes Foamy Macrophage Lipid Uptake and Survival in Atherosclerosis. Out today in Nature Cardiovascular Research! Great collaboration with @konsolerr @CFI_UMN @UMN_IBP @therealtyrone50
nature.com/articles/s44161-0…
11
39
191
16,633
28 Sep 2023
It still haunts me that someone decided that best naming for functions that serialize and deserialize objects to single files in R are
saveRDS() and readRDS()
while at the same time
tables: write.table - read.table
environments: save - load
but no
saveRDS() and readRDS()
4
483
2 Sep 2023
Hey Berliners, can anyone recommend English-speaking hausarzt (general practice doctors). Ideally Schoneberg / Kreuzberg area but honestly just recommend me any doctors you had good experiences with.
berliners retweet pls🩷
1
2
382
Konstantin Zaitsev retweeted
24 Jul 2023
Btw, I'm still open for job options. Especially I'd be interested to learn about industry opportunities in Europe. I'm the author of FGSEA package and other tools for analysis of omics data, but open to switching the area. Here is my CV: drive.google.com/file/d/1sxF… pls RT
32
64
15,185
Konstantin Zaitsev retweeted
26 Apr 2023
For this release we've updated the tutorial on gene set coregulation analysis with fancier and more reproducible figures for single-cell and spatial RNA-seq: bioconductor.org/packages/re…
26 Apr 2023
Bioconductor Release 3.17 is now available. See full release announcement at bioconductor.org/news/bioc_3… @Rstats @Bioconductor
3
14
2,500
Konstantin Zaitsev retweeted
15 Dec 2022
Нехорошие люди из ТИК 33 подали на меня иск на 1.5 млн о защите чести и достоинства за мою статью о фальсификациях в сентябре в #СПб. Хотят, чтобы удалил и опроверг. Поступлю иначе, вот еще раз их имена Николай Миронюк, Сергей Гусев и Дмитрий Голов.
4
21
116
5,231
Konstantin Zaitsev retweeted
13 Dec 2022
New preprint from our lab describing Phantasus - web-application for visual and interactive gene expression analysis biorxiv.org/content/10.1101/… Ever wanted to have a quick look at a dataset from GEO? You can do it easily for more thank 80K datasets using Phantasus
2
18
83
29 Nov 2022
More preprints with Jesse!
First time having "correspondence" next to my email address feels great :)
We predicted (mostly @mfiruleva) the monocyte->macs trajectories in plaques using a lot of public scRNA-seq data
Trem2 is required for Foamy Macs to survive in athero plaque
29 Nov 2022
Pre-print Alert!🚨 Our new study, Trem2 Promotes Foamy Macrophage Lipid Uptake and Survival in Atherosclerosis, is online! Research was lead by Mike @therealtyrone50 and Masha @mfiruleva. Big thanks to great collaborator @konsolerr! @CFI_UMN @UMN_IBP
biorxiv.org/content/10.1101/…
1
10
15 Jun 2022
Twitter now asks me, when I retweet, if I want to read the article first - objectively a cool feature. Thanks twitter, it's a good idea to read your own papers.
12
Konstantin Zaitsev retweeted
15 Jun 2022
Excited to share our newest paper, a joint effort with Stoyan Ivanov's group. Study led by @Bastien_Dolfi with @AlexGallerand @konsolerr examines adrenal gland macrophage development and sex-driven differences in diversity and function. @UMN_IBP @CFI_UMN
cell.com/cell-reports/fullte…
8
15
66