A scientist-engineer interested in bio/cheminformatics algorithms and biophysical simulations to study proteins and peptides. Working at @novonordisk
Joined December 2009
- Tweets 138
- Following 322
- Followers 323
- Likes 483
20 Photos and videos
Rodrigo Ochoa retweeted
26 Aug 2024
Check out my new work with @FrankNoeBerlin where we answer if the structure of different protein conformations really can be predicted. nature.com/articles/s41467-0… Also try the Colab to see if your protein has different conformations: colab.research.google.com/gi…
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Rodrigo Ochoa retweeted
16 Sep 2023
new: "pyPept: a python library to generate atomistic 2D and 3D representations of peptides" jcheminf.biomedcentral.com/a…
ALT ToC graphics.
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13 Sep 2023
I am happy to share this paper about pyPept, a python library to easily create, manipulate, and analyze complex #peptides. The paper is open access and available in the Journal of Cheminformatics: jcheminf.biomedcentral.com/a…
Code available in Github: github.com/Boehringer-Ingelh…
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Anti-obesity drug also protects against heart disease — what happens next? go.nature.com/3QyyE54
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Rodrigo Ochoa retweeted
15 May 2023
A Colombian man is only the second patient identified with the miraculous ability to defy the devastating Alzheimer’s gene, an international team of scientists report in the journal Nature Medicine.
Doctors hope the two known cases will allow researchers to develop new treatments to protect other people with Alzheimer’s disease. wapo.st/3Oa6FY8
ALT Image of a 3D brain scan next to white bold font reading: "He defied Alzheimer's for two decades. Scientists want to know how."
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Rodrigo Ochoa retweeted
15 May 2023
Cordialmente invitados a nuestro webinar en español con el Dr. Rodrigo Ochoa @raod85 este sábado 20 de mayo. 🤓🤓🤓.
Link de inscripción:
forms.gle/R59YqRs8r7y3DZXm9
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21 Mar 2023
Happy to share in @ChemRxiv the latest version of PepFun (2.0) with improved functionalities to study natural and modified peptides using sequence and structure-based approaches doi.org/10.26434/chemrxiv-20… #compchem
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25 Nov 2022
Excelente que puedan participar en el @LatinXChem. En 2021 tuve la fortuna de participar y ganar en la categoría de #LXChemComp. Que disfruten mucho la experiencia y aprendan bastante de sus colegas latinxs aportando a la Química desde distintos lugares en el mundo #compchem
PCCP are also proud to join @digital_rsc in sponsoring the prize for the best #LXChemComp poster @LatinXChem
📆 Join the conference on Monday Nov 28th, 12:00 UTC 📆
¡No faltes!
@theochemmerida @nanoprofe #LatinXRollCall
ALT A promotional graphic showing P-C-C-P and Digital Discovery both sponsoring the poster price for best Computational Chemistry poster at LatinXChem 2022
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Rodrigo Ochoa retweeted
9 Nov 2022
Great paper by @raod85 et al. 🇨🇴 Thanks for your contribution to the theme issue "#AI in the Life Sciences by #LatinAmericans" edited by @carolinahortago and @difacquim 👉
journals.elsevier.com/artifi…
24 Oct 2022
"Open protocols for docking and MD-based scoring of peptide substrates" Available on @AILSCI !
🔗Find more here: 2zaj.short.gy/aAKsFr
#openaccess #docking #moleculardynamics #ML
ALT https://github.com/rochoa85/Protocols-Peptide-Binding
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Rodrigo Ochoa retweeted
24 Oct 2022
"Open protocols for docking and MD-based scoring of peptide substrates" Available on @AILSCI !
🔗Find more here: 2zaj.short.gy/aAKsFr
#openaccess #docking #moleculardynamics #ML
ALT https://github.com/rochoa85/Protocols-Peptide-Binding
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19 Oct 2022
Very happy to share our latest article at @Boehringer and @UdeA about mPARCE, a protocol to optimize bound peptides using natural and non-natural amino acids. It can be run in a local computer to improve peptide binder sequences in just a few hours: link.springer.com/article/10…
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16 Oct 2022
If you have a chance to watch this show please do it, it is f***ing amazing. One of the best tv series I have seen in years 🤯
Severance (TV Series 2022– ) - IMDb - m.imdb.com/title/tt11280740/…
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Rodrigo Ochoa retweeted
5 Oct 2022
I was recently asked what would happen if I used the same equipment I shot planets with to shoot our moon.
Well, this: A 562 megapixel image, featuring one of the most detailed looks at the craters of our moon I've ever done. Zoom in to your heart's content.
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3 Oct 2022
Repurposing drugs or finding hits against tropical diseases like leishmaniasis is a challenging task. In this chapter we summarize the research of almost 10 years using computational approaches to propose a set of anti-Leishmania candidates #compchem #udea
authors.elsevier.com/a/1fs4m…
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Rodrigo Ochoa retweeted
27 Sep 2022
Abiotic peptides with high chemical stability can be used to encode the synthesis of small molecules, affording peptide-encoded libraries (PELs) as a new drug discovery platform! @NathalieGrob & my work in @BuchwildGroup & @PenteluteLab now on @ChemRxiv doi.org/10.26434/chemrxiv-20…
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Rodrigo Ochoa retweeted
13 Sep 2022
BILN: A Human-Readable Line Notation for Complex Peptides #compchem #cheminformatics
@raod85
pubs.acs.org/doi/10.1021/acs…
#current_issue #JCIM #Application_Notes
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Rodrigo Ochoa retweeted
12 Sep 2022
Using #immunopeptidomics with 1,500 tumor and tissue samples, researchers in @ScienceTM have discovered a new cancer-specific epitope shared across various solid tumor stroma that could offer a safe target for adoptive #TCellTherapy. fcld.ly/qbnubh4
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Rodrigo Ochoa retweeted
29 Aug 2022
#PapersUdeA -💉🔬 The PanMHC-PARCE protocol seeks to accept mutations that not only improve affinity, but also reduce the affinity gap between alleles. The method allows the engineering of peptides with improved binding properties. 👉 Details: bit.ly/3w8R8xR
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20 Aug 2022
We present an easy, human-readable line notation to describe even complex #peptides. The BILN format can represent linear and cyclic peptides with unnatural AAs, branches, and other components (code to convert to/from HELM). Available in JCIM: pubs.acs.org/doi/10.1021/acs… #compchem
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