Making science faster with algorithms. Assistant prof CU Boulder, Computer Science and BioFrontiers.
Joined October 2008
- Tweets 1,391
- Following 279
- Followers 1,159
- Likes 932
108 Photos and videos
ryanlayer retweeted
2 Oct 2024
How to annotated SV with pop. frequency? Using @PacBio & @nanopore! Gnomad 32% & STIX: 95.9% of SV from @GenomeInABottle annotatable!
Huge implications in SV filtering for eg: @GREGoR_research & #cancer & #disease studies!
Lead by @wtoxzpw & @ryanlayer biorxiv.org/content/10.1101/…
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ryanlayer retweeted
1 Oct 2024
STIX: Long-reads based Accurate Structural Variation Annotation at Population Scale biorxiv.org/cgi/content/shor… #biorxiv_bioinfo
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ryanlayer retweeted
10 Feb 2024
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🌟🐝🔥 New paper alert 🌟🐝🔥
"Embracing firefly flash pattern variability with data-driven species classification" with @nguyenchantal , @RaphaelSarfati , @DieuMyNguyen , M Iuzzolino, M Chowdhury, @ryanlayer, @oritpeleg
nature.com/articles/s41598-0…
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ryanlayer retweeted
10 Feb 2024
🌟 Proud to share a new paper on the flash pattern variability of fireflies! Our work, led by @lepurplemartin & @nguyenchantal in collab with @ryanlayer’s lab, offers new insights into species identification through ML data analysis: nature.com/articles/s41598-0… /1
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ryanlayer retweeted
9 Jan 2024
HUGE CONGRATS TO @hdashnow!
news.cuanschutz.edu/dbmi/har…
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ryanlayer retweeted
Rare disease research is at the forefront of the DBMI's work. When Harriet Dashnow, PhD, (@hdashnow) joins our team this summer, she will focus on computational research, rare genetic disease, and the discovery of new causal variants. Meet Dr. Dashnow 👇
news.cuanschutz.edu/dbmi/har…
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7 Dec 2023
I am sad to be missing #GI2023, but please check out talks from Christopher and @kschneider_cu on Friday, posters #60 from @michael_boulder and #57 from Morteza Baradar on Thursday, and poster #178 from Xinchang Zhen and @sedlazeck on Friday.
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ryanlayer retweeted
14 Nov 2023
Hypothesis Generation For Rare and Undiagnosed Diseases Through Clustering and Classifying Time-Versioned Biological Ontologies biorxiv.org/cgi/content/shor… #biorxiv_bioinfo
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13 Nov 2023
Excited about @michael_boulder's 1st 1st-author paper biorxiv.org/content/10.1101/… Mixed STRING & @hp_ontology. Used time-series learning to id co-clustered genes/traits that may explain unsolved cases. Tested on MyGene2 & @ChildrensColo patients. Slick GUI at ryanlayerlab.github.io/BOCC/)
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ryanlayer retweeted
2 Nov 2023
I'm looking for talented postdocs and staff scientists/software developers to join my lab at @CUBiomedInfo
If you're fascinated by #RareDisease genomics, #STRs and computational methods, please get in touch!
I'm at #ASHG2023 this week, and happy to chat. #hiring
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25 Jul 2023
My lab has open positions for developing innovative methods at cross roads of genomics, algorithms, and machine learning. Apply here jobs.colorado.edu/jobs/JobDe… if you have your MS and here jobs.colorado.edu/jobs/JobDe… if you have your PhD. Reach out to me directly if you have questions.
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ryanlayer retweeted
6 Jan 2023
The @jxtxFoundation for Open Science will award six scholarships for the CSHL Biology of Genomes meeting covering full conference registration to outstanding graduate students. Application deadline is February 6, 2023. For details: jxtxfoundation.org/news/2022… @cshlmeetings #bog23
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26 Oct 2022
Congrats to Murad Chowdhury! His #ASHG22 poster got a Reviewers Choice Award. Check it out for yourself how he is using population-scale data to improve samplot #SV visualization. PB2317 Thursday 10/27 3-445. github.com/ryanlayer/samplot
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25 Oct 2022
Apps are open for Interdisciplinary Quantitative Biology #PhD Program at @CUBoulder @BioFrontiers Learn both sides of #quantitative #biology with funded rotations through wet and dry labs among 11 departments. colorado.edu/certificate/iqb…
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5 Oct 2022
You are in luck! @BioFrontiers is hiring 2 asst profs in any area, as long as it's interdisciplinary. Work with some truly impressive people like NSF Waterman awardee @DanLarremore NIH Pioneer @Sara_Sawyer_, HMMIs, NASs, nobel laureate, and, you know, me! jobs.colorado.edu/jobs/JobDe…
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Our work on integrating population data into SV analysis can be found at github.com/ryanlayer/stix and github.com/ryanlayer/samplot If you missed the talk check out this recording youtu.be/TsekM1VjFrA #GI2022
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Plenty of time to get your {long-read | short-read | machine learning | genotype} x { SV | CNV | TE | SNV} method into the #bibm2022 workshop on Computational methods to characterize genomic variants using high-throughput sequencing data in Vegas, Dec 6-9 combioconference.github.io/b…
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