@AaronNewmanLab profile picture
Aaron Newman Lab @AaronNewmanLab

Computational biology, cancer genomics, & stem cell bioinformatics lab @Stanford @czbiohub

Joined October 2021
  • Tweets 81
  • Following 271
  • Followers 1,136
17 Photos and videos
Pinned Tweet
Aaron Newman Lab@AaronNewmanLab
May 6
1/ Thrilled to share our new paper, out today in @Nature: "Non-invasive profiling of the tumour microenvironment with spatial ecotypes". Paper (open access): nature.com/articles/s41586-0…

Non-invasive profiling of the tumour microenvironment with spatial ecotypes

Nature - Multimodal machine learning reveals that tumour microenvironments can be decomposed into spatially organized multicellular ecosystems, termed spatial ecotypes, that can be accessed...

nature.com
17
137
405
111,201
1/ Thrilled to share our new paper, out today in @Nature: "Non-invasive profiling of the tumour microenvironment with spatial ecotypes". Paper (open access): nature.com/articles/s41586-0…

Non-invasive profiling of the tumour microenvironment with spatial ecotypes

Nature - Multimodal machine learning reveals that tumour microenvironments can be decomposed into spatially organized multicellular ecosystems, termed spatial ecotypes, that can be accessed...

nature.com
17
137
405
111,201
more replies
15/ We are grateful to our funding sources including @theNCI, @TheVFoundation, @CancerRF, @MelanomaReAlli, and @Ludwig_Cancer. We deeply thank the patients and their families whose generous contribution of samples made this research possible.
1
7
1,504
16/ GitHub: github.com/digitalcytometry/… Web interface: spatialecotyper.stanford.edu

GitHub - digitalcytometry/spatialecotyper: Deciphering spatial ecotypes from spatial, single-cell,...

Deciphering spatial ecotypes from spatial, single-cell, and bulk transcriptomic data - digitalcytometry/spatialecotyper

github.com
1
5
1,243
Thanks @IamLinghua !!
Linghua Wang, MD, PhD@IamLinghua
Mar 20
Replying to @aadel_chaudhuri @yuanjamesrao @MayoRadOnc @AaronNewmanLab @StanfordCancer @NIH
Incredible🌟huge congratulations, Aadel and Aaron! 🎉🎊👏
720
Aaron Newman Lab retweeted
Steven Artandi, MD, PhD@SCIDirector
31 Oct 2025
SCI @AaronNewmanLab & others unveil CytoTRACE 2, a deep learning tool that predicts absolute cell developmental potential from #SingleCell RNA-seq data, outperforming prior methods and refining maps of cell fate and potency across tissues. brnw.ch/21wX6j4 @kang_minji_
1
4
13
1,231
Aaron Newman Lab retweeted
Nature Methods@naturemethods
29 Oct 2025
CytoTRACE 2: an interpretable deep-learning method that uses scRNA-seq data to predict absolute developmental potential across datasets. nature.com/articles/s41592-0…

Improved reconstruction of single-cell developmental potential with CytoTRACE 2

Nature Methods - CytoTRACE 2 is an interpretable deep learning framework that leverages single-cell RNA sequencing data to predict absolute developmental potential across datasets.

nature.com
31
113
9,985
Congrats to a brilliant team for bringing CytoTRACE 2 to life and grateful to our funding sources including @czbiohub @theNCI
Gunsagar Gulati
@gungulati
27 Oct 2025
[1/10] We’re excited to introduce CytoTRACE 2 — a major upgrade for inferring developmental potential from single-cell RNA-seq across datasets. @naturemethods Led by @kang_minji_ in @AaronNewmanLab. 📄 Paper: nature.com/articles/s41592-0… 🔗 Shareable link: rdcu.be/eMTVO
1
6
16
4,584
Load more