Joined May 2020
- Tweets 177
- Following 179
- Followers 1,179
- Likes 134
1 Photos and videos
AdamArkin_Lab retweeted
May 20
š New Preprint š from phagefoundry.org/
š„³ Super excited to share our work on generating systematic 95 phage-99 MDR P. aeruginosa strain interaction dataset & use of ML to predict phage susceptibility & phage cocktails from target genome sequences alone, w validations.
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AdamArkin_Lab retweeted
š„³ Huge preprint š Today we share something our group has been working toward for a long time, led by
@LucasMoriniere We asked can we predict which receptor a phage targets from its genome sequence alone? For most phages, we couldnāt. So Lucas set out to do something crazy!
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16 Nov 2025
This is the first of a powerful set of work from this amazing team! I am extremely grateful to work with these amazing young scientists-@AveryNoonan and @LucasMoriniere, my long time colleague and friend @vivek_mutalik and the EDGE and Phage Foundry teams. This group is on fire.
16 Nov 2025
Posting here after a year to share:
š£ New preprint from phagefoundry.org team š£šš
We developed a solid machine learning framework & to predict strain-level phage-host interactions across diverse bacterial genera from genome sequences alone.
biorxiv.org/content/10.1101/ā¦
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AdamArkin_Lab retweeted
29 Jan 2024
New article explores the intersection of biology and space exploration, highlighting fields like Astrobiology, Bioastronautics, and Space Bioprocess Engineering.
nature.com/articles/s41526-0ā¦
@AdamArkinLab @CharlesCockell
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AdamArkin_Lab retweeted
5 Dec 2023
#Phages are key drivers of #MicrobialEvolution, but many #phage genes are poorly understood. @denish_piya @AdamArkinLab @vivek_mutalik &co use arrayed genome-wide #CRISPRi to map gene the essentiality landscape in the iconic coliphages Ī» & P1. #PLOSBiology plos.io/3uLtzgU
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AdamArkin_Lab retweeted
1 Dec 2023
If you are excited about gut microbiome, phages, & tools/tech to study their interactions, join/follow the awesome @_YHuang lab š
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AdamArkin_Lab retweeted
15 Nov 2023
In this work, we bring OrthoRepās mutation rate up to 10^-4 substitutions per base, allowing us to durably hypermutate and evolve chosen genes in vivo at 1-million times the genomic mutation rate of the host yeast cell. What does this afford? biorxiv.org/content/10.1101/ā¦
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AdamArkin_Lab retweeted
7 Oct 2023
Today we released ModelSEED v2 in KBase (kbase.us). If you try the new tools any feedback is appreciated.
ModelSEED v2: High-throughput genome-scale metabolic model reconstruction with enhanced energy biosynthesis pathway prediction biorxiv.org/content/10.1101/ā¦
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13 Sep 2023
It was great to work with the NAS team helping to thing of the next decade of biology of in space. Just released!
Thriving in Space: Decadal Survey for the Biological and Physical Sciences in Space
Explore the digital interactive summary: nap.nationalacademies.org/reā¦
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13 Sep 2023
The full report is:
nap.nationalacademies.org/caā¦
For those of us interested in the bioengineering side check out "Bioregenerative Life Support Systems" (BLiSS) and "Manufacturing Materials and Processes for Sustainability in Space" (MATRICES)!
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13 Sep 2023
Thanks to Rob Ferl and Krysyn van Vliet for leading us! The NAS staff, the folk who briefed us and helped with the analysis of the large scale proposed studies, and the panel members were all an honor to work with-- and more importantly--fun!
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AdamArkin_Lab retweeted
12 Sep 2023
First round of positions openš„. If interested, please apply.
Project Scientist (Phage Foundry)Ā -Ā lbl.taleo.net/careersection/ā¦
Postdoctoral Fellow (Phage Foundry)Ā -Ā lbl.taleo.net/careersection/ā¦
Research Associate (Phage Foundry)Ā -Ā lbl.taleo.net/careersection/ā¦
11 Sep 2023
Congrats to @vivek_mutalik and colleagues, who have received funding from the BRaVE initiative (US Dept of Energy) to expand their #Phage Foundry, a platform for phage countermeasures against #AMR pathogens.
buff.ly/3RgTCFR
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7 Sep 2023
Come join the next generation of open and collaborative biological data science with me and a great team! linkedin.com/jobs/view/37075ā¦
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7 Sep 2023
Seriously happy to have an excuse both to continue my long association with @vivek_mutalik, @DeutschbauerLab and @HansCarlson3 and these others that I have admired and canāt wait to learn from!
7 Sep 2023
A dream team really. š @simroux_virus @AdamArkinLab @DeutschbauerLab @bkoskella @HansCarlson3 @bradyfcress @mark_mimee @AAthalassophile @cmageeney & Drs Elisabeth, Snijders & Mukundan at @LBNLBioSci
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7 Sep 2023
Congrats @vivek_mutalik and the amazing BRaVe on our new phage foundry! Realization of a long held dream. energy.gov/science/articles/ā¦
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AdamArkin_Lab retweeted
25 Aug 2023
With an incredible cast of invited speakers @AdamArkinLab @LabSonnenburg @omalleylab @jennbrophy7 @Geneticdesigner @trentn @mark_mimee @ericmyces Venessa Ridaura (@gatesfoundation), Kara Nelson (@UCBerkeley), Seth Rakoff-Nahoum (@harvardmed), Zack Abbott (@ZBioticsCompany)!
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AdamArkin_Lab retweeted
25 Aug 2023
A fast comparative genome browser for diverse bacteria and archaea
fast.genomics.lbl.gov
Super cool work from Morgan Price ā¦@LBNLBioSciā© ā¦ā¦ā¦@AdamArkinLabā© biorxiv.org/content/10.1101/ā¦
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AdamArkin_Lab retweeted
15 Jul 2023
We are looking for postdoc researchers to study diverse aspects of phage-host interactions. If you are interested in any of these šš¼studies, please send me a dm or email me.
6 Jul 2023
New #vom2023 friends, Thanks for following. didnāt see much Highthroughput genetics in the meeting, so shamelessly sharing our favorite recent papers: E. coli work: journals.plos.org/plosbiologā¦
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AdamArkin_Lab retweeted
5 Jun 2023
Sharing our latest- go team ENIGMA! Distinct Depth-Discrete Profiles of Microbial Communities and Geochemical Insights in the Subsurface Critical Zone @XiaoqinWu @laurenmlui @gushgari @AdamArkinLab @EMSLscience @BerkeleyLab @eesalbnl @LBNLBioSci journals.asm.org/eprint/YNJ3ā¦
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