Open-source deep learning software to automatically segment axons & myelin sheaths. Developed & supported by @polyneuro

Joined December 2020
Photos and videos
AxonDeepSeg retweeted
Nouvel article en libre accès du prof. @jcohenadad et de son équipe, traitant d'une structure de données en imagerie médicale 🧠📝 #RecherchePolyMtl
We are excited to announce the publication & release of the #BIDS extension for #microscopy (BEP031), lead by @PolyNeuro researcher Marie-Hélène Bourget. "Microscopy-BIDS: An Extension to the Brain Imaging Data Structure for Microscopy Data" @FrontNeurosci frontiersin.org/articles/10.…
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We're happy to share this co-first authored work by Simeon Daeschler @dr_borschel's lab @sickkids & Marie-Hélène Bourget @jcohenadad's lab @PolyNeuro. AxonDeepSeg was used to automatically segment myelinated peripheral nerves from light microscopic images. nature.com/articles/s41598-0…
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AxonDeepSeg retweeted
We are excited to announce the start of the community review for BEP031:Microscopy! The extension proposal may be viewed at: bids-specification--881.org.… and comments left on their pull request: github.com/bids-standard/bid… [1/3]

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AxonDeepSeg retweeted
Delighted to see the first addition to #BIDS by the Microscopy BEP, introducing the sample entity - useful to differentiate different samples from the same subject! Great work by Marie-Hélène Bourget @jcohenadad and BEP031 team @satra_ Excited for the next steps of this BEP!🎉
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AxonDeepSeg retweeted
MRI in Canada: Julien Cohen-Adad @jcohenadad, professor @polymtl @UMontreal and Director of @PolyNeuro, was interviewed by Audrey Fan @audreypfan for the 2021 MRM Highlights Magazine (page 17). @ISMRM #ISMRM #ISMRM21 #ISMRM2021 blog.ismrm.org/2021/05/14/mr…
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AxonDeepSeg retweeted
11 Feb 2021
Replying to @eliana_lousada
We'd love to support your usecases @christlet, and the beauty of @AxonDeepSeg is that, by virtue of being open-source, you can help improve it 😊 You're welcome to spark a conversation in github.com/neuropoly/axondee… too!
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AxonDeepSeg retweeted
Preprint is out now! Thank you @eburguiere @c_schreiweis @AxonDeepSeg @_mattboud @jcohenadad & Brahim Nait-Oumesmar
Reduced axon caliber in the associative striatum of the Sapap3 knockout mouse biorxiv.org/cgi/content/shor… #biorxiv_neursci
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Hello world! AxonDeepSeg is an #opensource #Python library (and GUI plugin for @FSLeyes) to automatically segment myelin & axons in your microscopy data, using #NeuralNetworks / #DeepLearning / #MachineLearning. See our website for info, and follow us for news about the project!
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