Joined April 2012
- Tweets 55
- Following 337
- Followers 228
- Likes 178
Photos and videos
Ida Lindeman retweeted
7 Jul 2025
Very happy to share our latest preprint, where we address the relationship between systemic and gut IgA. See link below and details in 🧵. Huge thanks to everyone involved!
biorxiv.org/content/10.1101/…
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Ida Lindeman retweeted
8 Apr 2024
Generation of circulating autoreactive pre-plasma cells fueled by naive B cells in celiac disease dlvr.it/T5DBjy
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Ida Lindeman retweeted
12 Mar 2024
Tissue proteomics with clinical value in #celiac disease: - bitly.ws/3fGa2 Great work Anette Johansen and thank you collaborators in particular @SandveGeir for expert ML knowledge! @CeliacDotOrg @UniOslo_MED @Coeliac_UK @AGA_Gastro @coliakiforening
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Ida Lindeman retweeted
24 Oct 2023
Very happy to share this story on autoreactive B cells in celiac disease together with @IdaLindeman @LeneHoydahl @ChristophAsb @LouiseFRisnes @JCoDiRC. Here, we identify a population of circulating IgA-switched B cells specific to the self-antigen transglutaminase 2 (TG2).
24 Oct 2023
Generation of circulating autoreactive pre-plasma cells fueled by naive B cells in celiac disease biorxiv.org/cgi/content/shor… #biorxiv_immuno
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Ida Lindeman retweeted
25 Oct 2022
Very happy to share that our paper on anti-gluten antibodies in celiac disease is out now in @CellReports. The study was led by Chunyan Zhou @JCoDiRC @UniOslo_MED and was a great collaboration with the Buus lab @UCPH_health. Details in 🧵
cell.com/cell-reports/fullte…
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Ida Lindeman retweeted
27 Sep 2022
New work from our @UiO_LifeSci ImmunoLingo convergence environment in which we leverage linguistics to formalize the antibody sequence language. arxiv.org/abs/2209.12635. Work led by @MaiSpaceHa, @PRobertImmodels, @pandaisikit.
See🧵below by @MaiSpaceHa for details.
27 Sep 2022
New preprint from the ImmunoLingo convergence environment: “ImmunoLingo: Linguistics-based formalization of the antibody language”. We asked: how to define the language of antibody sequences for more efficient antibody therapeutics design? 1/7
arxiv.org/abs/2209.12635
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9 Mar 2022
We're looking for an enthusiastic #postdoc to join the Sollid group (med.uio.no/klinmed/english/r…) at the University of Oslo through the #ScientiaFellows program to investigate genetic polymorphisms in adaptive immune receptors. Please share and DM if interested! #postdocjobs #AIRR
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Ida Lindeman retweeted
31 Jan 2022
We used scRNA-seq to assess the combined transcriptome and Ig repertoires of CSF B cells in MS. This revealed a stereotyped B-cell response using IGHV4/IGKV1 in patients carrying certain IGHC alleles! @EurJImmunol #MS onlinelibrary.wiley.com/shar…
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Ida Lindeman retweeted
29 Jan 2022
Happy to share this story on anti-gluten antibodies in celiac disease. biorxiv.org/content/10.1101/… The project was led by Chunyan Zhou @JCoDiRC @UniOslo_MED and is the result of a long-standing collaboration with the Buus lab @uni_copenhagen. Main findings are summarized below.
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Ida Lindeman retweeted
24 Jan 2022
Happy to share our work on multi-dimensional comparison of immune repertoires. Amazing work by @cedricrweber. Great collaboration with Xiao Liu, @ReddyLab_ETHZ, @mkuijjer, and, as always, @SandveGeir. Main findings in 🧵. biorxiv.org/content/10.1101/….
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Ida Lindeman retweeted
17 Jan 2022
So you ran a single-cell RNA seq experiment...now what? Ludvig Sollid @JCoDiRC and @IdaLindeman reviews single-cell approaches in the investigation of celiac disease: nature.com/articles/s41385-0… #Celiac #SingleCell
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Ida Lindeman retweeted
3 Nov 2021
We just released CompAIRR – a tool that reduces greatly the longstanding computational bottleneck of identifying shared identical and similar sequences among large sets of immune repertoires. All the details/links are in the thread below. Feedback is very welcome! @airr_community
2 Nov 2021
We are happy to report a dramatic speedup for one of the core computations for adaptive immune receptor repertoire (AIRR) analysis - the discovery and counting of receptors that overlap between repertoires! Check out our CompAIRR method: biorxiv.org/content/10.1101/… 1/7
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Ida Lindeman retweeted
10 Jul 2021
Another new preprint! We combined virtually-docked 3D-antibody-antigen binding complexes with an unbiased in silico oracle to explore at unprecedented resolution the principles of ML-based antibody design with respect to affinity, conformational epitope, and developability. 1/2
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Ida Lindeman retweeted
8 Jul 2021
Happy to share our preprint: "A billion synthetic 3D-antibody-antigen complexes enable unconstrained machine-learning formalized investigation of antibody specificity prediction"
biorxiv.org/content/10.1101/…
Check out Absolut! database software to simulate more
github.com/csi-greifflab/Abs…
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Ida Lindeman retweeted
27 Jun 2021
Our review on "Immunoglobulin germline gene variation and its impact on human disease" is out. Great collaboration with @immuno_ivana and Ludvig Sollid @JCoDiRC. @airr_community Link: nature.com/articles/s41435-0…
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Ida Lindeman retweeted
24 May 2021
AIRR ML: Did you know that baseline machine learning methods can perform well even when disease-associated signals are present in only 2 out of 100 000 receptors in diseased adaptive immune repertoires? Check our latest preprint: biorxiv.org/content/10.1101/… 1/10
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23 Apr 2021
Check out our new paper on B-cell responses in multiple sclerosis! We used scRNA-seq and BCR-reconstruction to characterise B-lineage cells in the CSF, and identified stereotypical B-cell responses linked to IgG constant region polymorphisms. biorxiv.org/content/10.1101/…
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Ida Lindeman retweeted
20 Apr 2021
1/11 Did you ever wonder whether individuals have the same probability of generating a given antibody sequence? Turns out, they do not – not even twins!
We showed that humans – including monozygotic twins – have unique VDJ recombination rules. biorxiv.org/content/10.1101/…
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Ida Lindeman retweeted
16 Mar 2021
Over the moon that our study on the predictability of antibody-antigen binding is featured on the cover page of @CellReports! The cover was designed by our resident scientific illustrator @pandaisikit (who's also the first author).
Link to paper: cell.com/cell-reports/fullte…
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Ida Lindeman retweeted
9 Mar 2021
Beyond happy to share our @immuneml platform, which streamlines your machine learning analyses on adaptive immune receptor repertoire data. It can be extended in all possible ways. Fantastic teamwork with the @SandveGeir lab. Let us know what you think! @airr_community 1/2
9 Mar 2021
Very happy to finally release immuneML – an open-source python platform that streamlines development, application, and benchmarking of immune receptor machine learning for predicting immune status or antigen specificity (immuneml.uio.no). biorxiv.org/content/10.1101/… 1/10
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