BioML, Uncertainty Estimation/XAI, Scientific Reproducibility @FU Berlin

Joined October 2019
4 Photos and videos
Easy jailbreak to get Claude to claim to be a human:
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ML-based cancer cell line drug response models are well-motivated, and significant research effort has gone into developing complex modeling approaches (over 100 papers in 2025). The problem: under rigorous evaluation, we found none that actually works.
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Most are published based on inflated metrics, break down when probed in realistic application scenarios, and are outperformed by simple baselines. We built DrEval, a pipeline for unbiased evaluation of these models, to encourage more meaningful progress in the field.
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Now published in Nature Communications: nature.com/articles/s41467-0… DrEval could also function as an unbiased reward signal for AI agent–based model development in biological ML. We are happy to chat about this if anyone is interested in details :)
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A recent npj Digital Medicine paper reads as a complete LLM-slop. Inconsistent p values. Released code doesn't produce what the paper shows. Wrong metadata in the citations. How does this get through review? nature.com/articles/s41746-0…
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Pascal Iversen retweeted
20 Sep 2024
Simon Witzke presenting his poster @ECCBinfo! #ECCB2024 @witsyke and @Iv_Pascal recent work in explaining aleatoric uncertainty in regression can help increase transparency in digital health.
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Pascal Iversen retweeted
Lukas will present SimbaML 🦁 at the #ICLR2023 Tiny Papers Showcase Day (a #DEI initiative) tomorrow (05/05) at 11:15am CAT! Come by to learn more about connecting mechanistic models and ML with augmented data! w/ @JulianZabbarov @witsyke @Iv_Pascal
13 Apr 2023
How can a century of scientific knowledge about system dynamics be harvested in the age of ML? Augment ML pipelines with ODE-generated synthetic data with SimbaML 🦁, our new Python tool accepted as #ICLR2023 Tiny Paper: arxiv.org/abs/2304.04000 @JulianZabbarov @witsyke @Iv_Pascal
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Pascal Iversen retweeted
13 Apr 2023
How can a century of scientific knowledge about system dynamics be harvested in the age of ML? Augment ML pipelines with ODE-generated synthetic data with SimbaML 🦁, our new Python tool accepted as #ICLR2023 Tiny Paper: arxiv.org/abs/2304.04000 @JulianZabbarov @witsyke @Iv_Pascal

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Months of using GitHub Copilot have made me crave it on Overleaf too. I find myself stalling and waiting for suggestions! 🤔 #AIassistants #Overleaf #GitHubCopilot
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Pascal Iversen retweeted
🥳Zwei HPIler für herausragende Abschlussarbeiten von der @unipotsdam ausgezeichnet: HPI-Masterabsolvent Hans Gawendowicz erhält den #Absolventenpreis 2022, HPI-Doktorand Pascal Iversen den Jacob-Jacobi-Preis. Wir gratulieren herzlich! ➡️Mehr Infos unter: bit.ly/3OJKXYn
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Pascal Iversen retweeted
11 Jul 2022
Hi, we are Renard lab🦊@HPI_DE and we're at #ISMB2022! Don't miss the talk by @jens_uwe_ulrich on ReadBouncer: precise and scalable adaptive sampling for #nanopore sequencing! Meet us @HiTSeq on Tue (tomorrow!), 12:10 CDT in room Madison B! @rki_de @ah_ol academic.oup.com/bioinformat…
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