PhD student @univgroningen | Computational biophysicist | CG Martini
Joined September 2020
- Tweets 93
- Following 276
- Followers 309
- Likes 465
6 Photos and videos
Pinned Tweet
18 Jan 2023
Happy to share that our perspective on whole-cell modelling using #Martini is out in @FrontChemistry!
To showcase the capabilities of the #Martini ecosystem, we build a model of an entire cell with near atomistic resolution. #ComputationalMicroscopy
doi.org/10.3389/fchem.2023.1…
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Jan Stevens retweeted
Happy to share the final publication from my PhD work now out in JCTC! @JCIM_JCTC
doi.org/10.1021/acs.jctc.5c0…
Thanks to @JanBrezovsky1 @CG_Martini and Prof. Adolfo Poma for their mentorship. Special thanks to all co-authors @JanAdStevens @surpeta_b, Carlos S. B. and Aravind S. T.
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Jan Stevens retweeted
4 Nov 2024
DNA plectonemes are intertwined loops which form when a single DNA molecule is stretched and twisted. Plectonemes are found in bacterial and eukaryotic cells and play important role in several biochemical processes as gene expression etc...
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arxiv.org/abs/2410.23145
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Jan Stevens retweeted
4 Oct 2024
Various PhD/post-doc positions available to work on synthetic cells, including purely computational projects in our group ! nature.com/naturecareers/job…
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Jan Stevens retweeted
23 Sep 2024
Glad to share our collaborative effort with @CG_Martini @JanBrezovsky1 @MandalNishita to study emergent protein tunnels by coarse-grained methods incl. our 💪 GōMartini 3 approach. Guess which method is recovering good agreement with all-atom MD.
biorxiv.org/content/10.1101/…
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Jan Stevens retweeted
29 Aug 2024
Martini 3 OliGo̅mers: A Scalable Approach for Multimers and Fibrils in GROMACS - Great work from Bart Bruininks, now in JCTC: pubs.acs.org/doi/10.1021/acs…
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Jan Stevens retweeted
18 Aug 2024
On the way to #ACSFall2024. Looking forward to meeting friends and making new ones. On Thursday (4110400) I will present our (@ricalessandri, @JanAdStevens, @SouzaPauloCT) advances on #polyplyMD for macromolecule modeling. Drop me a DM for anything #Martini3 you wann talk about.
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Register for our next workshop with @cecamEvents to discuss the recent developments and upcoming challenges in #MolecularDynamics simulations.
🗓️October 7-9, 2024
📍Lausanne, Switzerland & Online
More details➡️bit.ly/3Slrq4t
#MDDB #FAIRdata #openscience
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Jan Stevens retweeted
3 Aug 2024
It took some time, but Anna’s @amborowska beautiful work on the exchange mechanism of ASCT2 is now out. Together with twitterless Gabriella and @CPaulino @alisa_garaeva @rheinbergerj @CG_Martini
nature.com/articles/s41467-0…
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Jan Stevens retweeted
17 Jul 2024
I have been working like absolute crazy over the past two months for this - #MolecularNodes 4.2 is now released for #b3d 4.2
A huge number of new features - which I will cover some here.
- Selections using @mdanalysis selection language are updated live.
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Jan Stevens retweeted
28 Jun 2024
I wrote a piece for this issue of Microbiology Today! I got to reflect on the rise of AI and what we need to consider going forward 🖥️
You can check it out here 👇
27 Jun 2024
In The Promise and Perils of Generative AI article, @chelseabrowncg discusses AI's benefits and pitfalls. Brown also warns that while AI helps with understanding biological data, it can be biased and potentially harmful - microb.io/45h3Jj8 #MicrobiologyToday
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Jan Stevens retweeted
24 May 2024
I’m thrilled to be able to announce that we were granted a NWO Summit grant entitled ‘Evolving Life from Nonlife’ (EVOLF) with 40 million euro for a 10-year project aimed to cross the gap between non-life and life by assembling a living synthetic cell from lifeless biomolecules!
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Jan Stevens retweeted
21 May 2024
New preprint from a nice collaboration between the @IpbsToulouse Integrative Biological NMR team and my lab ( LMGM @CbiToulouse ): "Coarse-graining the recognition of a glycolipid by the C-type lectin Mincle receptor " spearheaded by @noriegamaxime
biorxiv.org/content/10.1101/…
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Jan Stevens retweeted
15 May 2024
Hello, my absolutely lovely membrane peeps! Would you maybe, pretty-please, let me proudly steer you to a MINI-REVIEW I recently wrote? It’s on asymmetric membranes in general, and differential stress in particular—subjects that I am massively interested in right now!
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Jan Stevens retweeted
14 May 2024
Great to see this review paper out! 🥳
I had a lot of fun helping with this, the first paper from my time here in Groningen! Check it out here 👇
14 May 2024
Why not include the rest of the cell in your next membrane simulation ?
Check our current opinion on "Modeling membranes in situ" sciencedirect.com/science/ar…
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Jan Stevens retweeted
30 Apr 2024
We explored the mechanisms behind slower diffusion of cytosolic proteins at the cell poles of E. coli using SMdM microscopy
Polyribosomes❌
mRNA❓
Protein aggregates, cell aging✅
Happy to be the part of Linnik @LenOvosch et al. team!
@MembraneEnzymo1
doi.org/10.1038/s42003-024-0…
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16 Apr 2024
Wow, these simulations look stunning! Can’t wait to delve into the details and learn more about MEGA mucins 🤯
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16 Apr 2024
Happy to have had a small MD contribution to this amazing work by @lyanvdsleen. Definitely worth a read!
doi.org/10.1016/j.celrep.202…
15 Apr 2024
Single-molecule optical tweezers reveal salt dependence of the interdomain interactions in a membrane transporter OpuA in nanodiscs
Congratulations to @lyanvdsleen and all the authors!
@JanAdStevens @CG_Martini @BiophysK 👏@MembraneEnzymo1
@CellReports:
doi.org/10.1016/j.celrep.202…
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