Stemformatics is a web based tool that allows stem cell biologists to visually analyse and explore interesting 'omic datasets.
Joined January 2012
- Tweets 459
- Following 75
- Followers 362
- Likes 54
113 Photos and videos
Pinned Tweet
21 May 2020
Have you seen the new Stemformatics.org integrated transcriptome atlases for blood cells? stemformatics.org/atlas/bloo…
#DataScience #RNA #Blood #CellClassification #GeneExpression
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Stemformatics retweeted
25 Oct 2021
Will be speaking on single-cell analysis of stem cell reprogramming!
Join us for the next National Stem Cell Conversations on Wed 3rd November 2021 at 11am AEDT featuring A/Prof Jess Mar @jessicacmar and Dr John F. Ouyang @imouyang discussing “Computational Methods in Stem Cell Research”. @StemCellsAus
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Stemformatics retweeted
1 Oct 2021
Thank you @mincle @Stemformatics @jarnychoi Our multi-disciplinary team of research data specialists throughly enjoyed working with you and we are thrilled to see the new portal! We look forward to more opportunities in the future! @MDAP_Unimelb
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Stemformatics retweeted
Always love talking about @ExpressionAtlas
10 Sep 2021
The final invited speaker of the day is Irene Papatheodorou @irenepapatheodo from @emblebi. Her talk is about the Single Cell Expression Atlas eci.co.uk/gxa which covers many species and biological conditions. #HIBIT2021
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Stemformatics retweeted
9 Sep 2021
Our perspective piece on the @humancellatlas
'A roadmap for the Human Developmental Cell Atlas'
is out now, *open-access*: nature.com/articles/s41586-0….
A learning curve! Provided me with much needed space to learn from leaders in this field and think on the bigger picture
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Stemformatics retweeted
8 Sep 2021
Excited to share that human Dendritic Cell atlas has been revealed by the updated version of @Stemformatics .
It's coming from the first year of my PhD research.
Check it out!
8 Sep 2021
We've built collections of transcriptome data from whole blood to tissue myeloid biology or dendritic cell subsets
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Stemformatics retweeted
We're hiring! Do you have a PhD or equivalent experience in a #dataIntensive #research field in the #Humanities and #SocialSciences? Then join the most amazing #interdisciplinary and #collaborative team of academics (not biased at all😜) Find out more: go.unimelb.edu.au/4eyi
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8 Sep 2021
Stemformatics was developed for collaborative communities, initially for @StemCellsAus and now with @Synnate1
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8 Sep 2021
so we welcome suggestions and feedback - contact us on the site, or via @jarnychoi or @mincle
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8 Sep 2021
Find out how similar your data is to the curated samples in the blood, myeloid or DC atlas (we use capybara, biorxiv.org/content/10.1101/…)
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8 Sep 2021
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8 Sep 2021
Use the curated bulk data to annotate immune cells in your single cell datasets - easy to follow vignettes on the stemformatics.org site
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8 Sep 2021
subset experimental categories to reveal reproducible expression patterns - like IL6 production by macrophages, but not some dendritic cell subsets, in response to gram-negative bacteria
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8 Sep 2021
You can explore gene expression across the hundreds of samples that contribute to our curated atlas collections stemformatics.org
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8 Sep 2021
We've built collections of transcriptome data from whole blood to tissue myeloid biology or dendritic cell subsets
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8 Sep 2021
We updated our data explorer with help from @MDAP_Unimelb - interactive categories, quickly get to the details of our curated metadata.
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8 Sep 2021
You can find tissues where your gene of interest is most commonly observed stemformatics.org
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