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Pinned Tweet
4 Jan 2024
Our latest @NAR_Open update paper is live! 🚀 Dive into the innovative features - query metadata via cell type wheel search, navigate data with tSNE/UMAP, and explore anatomograms & heatmaps. A new level of exploration!🧬🔎#DataScience #Research @emblebi
doi.org/10.1093/nar/gkad1021
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🚨 We’re hiring!
Our Functional Genomics team at @emblebi seeks a Full-Stack Software Engineer to work on Expression Atlas and Single-Cell Expression Atlas.
⏳ Less than a week left to apply - don’t miss out!
embl.wd103.myworkdayjobs.com…
#Hiring #SoftwareEngineer #Bioinformatics
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We’re hiring: Research Group Leader in computational biology.
Are you generating more research ideas than you can explore? Lead cutting-edge AI & biology research at EMBL-EBI.
Apply by 11 April 2026 embl.wd103.myworkdayjobs.com…
#ScienceCareers #Bioinformatics
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We’ve officially launched our LinkedIn page! 🎉
Follow us to stay updated on insights, projects, and upcoming announcements.
#LinkedInLaunch #NowLive #FollowUs
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👉 Follow us here: linkedin.com/company/embl-eb…
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17 Oct 2025
🚀 Expression Atlas Release 43 is live!
🧬 New Marker Gene View for all baseline (RNA & protein) experiments - instantly spot tissue- or condition-specific expression patterns.
🔎 Plus, a new technology filter for faster dataset discovery.
đź”—ebi.ac.uk/gxa
@emblebi
ALT Gene Markers showing in GTEx experiment.
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22 Aug 2025
We are looking for an ESPOD postdoctoral fellow in collaboration with @HaniffaLab to develop an Interactive Visualisation and Conversational AI Tools for Spatial Transcriptomics Data.
ebi.ac.uk/research/postdocs/…
@emblebi @sangerinstitute
Recruitment is now open for the EMBL-EBI–Sanger Postdoctoral (ESPOD) Programme.
ESPOD builds on the collaborative relationship between EMBL-EBI and @sangerinstitute, offering projects that combine experimental and computational approaches.
ebi.ac.uk/research/postdocs/…
#postdocjob
ALT ESPOD, the EMBL-EBI/Sanger postdoctoral fellowship. Applications deadline 30 September. Image credit: Karen Arnott / EMBL-EBI
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Expression Atlas retweeted
21 Aug 2025
Interested in spatial transcriptomics, interactive visualisation, and AI?
We’re teaming up with @HaniffaLab and @saezlab on Project 5 - for someone keen to build open tools that make complex biological data more accessible!
Apply by 30 Sep: ebi.ac.uk/research/pos...
Recruitment is now open for the EMBL-EBI–Sanger Postdoctoral (ESPOD) Programme.
ESPOD builds on the collaborative relationship between EMBL-EBI and @sangerinstitute, offering projects that combine experimental and computational approaches.
ebi.ac.uk/research/postdocs/…
#postdocjob
ALT ESPOD, the EMBL-EBI/Sanger postdoctoral fellowship. Applications deadline 30 September. Image credit: Karen Arnott / EMBL-EBI
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Did you attend @iscb's ISMB/ECCB 2025 in Liverpool? Colleagues from across @emblebi (including reps from #Ensembl, @deciphergenomic, @EBItraining, @PDBeurope and @ExpressionAtlas) surely did! What was your highlight of the conference? 🧬
ALT A photograph of a speaker on a stage and a screen projecting presentation slides.
ALT A photograph of an EMBL-EBI booth at a conference.
ALT A photograph of a speaker on stage with a screen projecting presentation slides and an audience looking towards the stage.
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20 Jul 2025
Exciting news! The latest @ExpressionAtlas bulk release is out, featuring 4562 datasets across 67 species. Explore 12 new plant datasets from sorghum, rice, Arabidopsis and maize, 🌾🌽 contributed by our @GrameneDatabase collaborators. Don't miss out! 🧬
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11 Jul 2025
The Functional Genomics Team at @emblebi is open to hosting #ARISE2 fellows! If you're interested in research infrastructure we welcome project ideas that support transcriptomics data reuse - incl. spatial, single-cell, or AI-ready infrastructure.
embl.org/training/arise2/
📢 Applications are now open for the #ARISE2 Fellowship Programme!
With funding from @MSCActions, the programme trains scientists to become leaders in research infrastructures and innovate in the #LifeSciences.
Apply here: embl.org/training/arise2/#vf…
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8 Jul 2025
We are seeking a Scientific Database Curator at @emblebi in collaboration with the @saezlab and @GSK.
This role involves wrangling public transcriptomic data - bulk, single-cell, and spatial - for translational use and integration into our open data resources
Deadline 20 July
2 Jul 2025
We have a curator position at @emblebi to work with GSK within a project to understand fibrotic processes (no PhD required). Deadline 20th July. Please share 🙏
embl.wd103.myworkdayjobs.com…
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If EMBL-EBI data resources have saved you time & effort, now is your chance to give back!
Fill in a 15-minute survey to help us:
🌍Demonstrate the real-world impact of these resources
🧠Understand your needs
🌟Secure continued funding
Closes 16 July 👉 surveymonkey.com/r/QGFMBH8?c…]
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24 Jun 2025
Our bioinformaticians @AnilThanki, @irisdianauy, and @compBiology will be attending #ISMBECCB2025!
Catch our talks and posters on @ExpressionAtlas, @Bioconductor, and @PersistSeq
#ISMBECCB #ISMB #ECCB #singlecell
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4 Mar 2025
This week, our team will be attending the Spatial Transcriptomics & Proteomics event on March 5-6 at @AstraZeneca Discovery Centre !🧬
If you’re attending too, we’d love to connect, feel free to reach out to our team! #SpatialBiology #Proteomics #Networking @emblebi @EBItraining
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Expression Atlas retweeted
28 Feb 2025
Thank you to everyone who attended the @ELIXIREurope #SpatialTranscriptomics FAIR Data Management Workshop over the last two days, both @emblebi and online! The discussions on metadata & data standards, archiving, and data retrieval were productive and insightful. #FAIRdata
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Expression Atlas retweeted
12 Feb 2025
The bioinformatics arm of the Functional Genomics Team and @ExpressionAtlas will participate in the @nf_core #hackathon at the @wellcomegenome Campus
Check out our challenge and join us, everyone is welcome!
@emblebi
@sangerinstitute
#nextflow
#singlecell
We've just put up the first batch of local sites for the upcoming @nf_core #hackathon (March 2025) on the website: nf-co.re/events/2025/hackath…
We've had a great response so far, with 23 sites (a record!), but we'd love more!
Are you able to book a meeting room for a local site?
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4 Feb 2025
Excited to invite you to the Spatial Transcriptomics FAIR Data Management Workshop on Feb 26-27 at EMBL-EBI (hybrid)! Join us to discuss metadata & data standards, archiving, and data retrieval. Agenda & registration: tinyurl.com/spatial2025
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31 Jan 2025
We're excited to announce that we're now on @bluesky! Follow us at expressionatlas.bsky.social for updates and join the conversation. #BlueSky #NewBeginnings
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10 Jan 2025
Excited to announce that 15 new human proteomics datasets are now available in our latest bulk release, thanks to our collaboration with @pride_ebi! Learn more in our recent publication: pubs.acs.org/doi/10.1021/acs… 🧬 #Proteomics #Research
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23 Dec 2024
From the Functional Genomics team at @emblebi, we extend our warmest wishes for a joyous holiday season filled with cherished moments and success in the New Year. 🎄 #MerryChristmas2024 #MerryChristmas
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