We're interested in the relationship between gene activity and phenotypic outcomes after challenges like genetic mutations, chromatin disruption and infection.
Joined June 2019
- Tweets 76
- Following 141
- Followers 135
- Likes 10
12 Photos and videos
21 Jan 2025
Someone on Mastodon recently posted about issues they've seen with #zebrafish annotation in recent #Ensembl versions, so we wrote down some of what we've noticed.
The TL;DR version is that we are just using Ensembl 109's annotation, including for enrichment analyses.
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Busch Lab retweeted
1 Mar 2024
Today is a very exciting day to see this paper finally published in @NatureGenet 💫
Congratulations to Ana Topf and Volker Straub for the hard work and the resilience 👩🔬 🔬 👨🔬
@jwmdrc @UniofNewcastle @anatopf
Enjoy the reading nature.com/articles/s41588-0…
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Busch Lab retweeted
26 Jan 2024
It was such a pleasure to give an interview for the First Person series @DMM_Journal!
This is a great space for researchers to highlight their science and plans for the future.
doi.org/10.1242/dmm.050683
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Busch Lab retweeted
26 Jan 2024
The final version of our new article is out @DMM_Journal! We analysed the transcriptome of Shigella flexneri infection in zebrafish larvae and discovered Shigella-inducible factors involved in controlling host susceptibility.
doi.org/10.1242/dmm.050431
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Busch Lab retweeted
22 Dec 2023
New article out! We analysed the transcriptional signature of Shigella flexneri infection in zebrafish larvae and discovered Shigella-inducible factors involved in controlling host susceptibility.
Thanks to all the co-authors!
doi.org/10.1242/dmm.050431
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Busch Lab retweeted
24 Feb 2023
Wave if you've enjoyed your week of #bioinformatics training 👋!
Thank you to the participants, trainers, and organisers at 'Introduction to RNA-seq and functional interpretation'. We look forward to seeing what you do next.
Discover more training: ebi.ac.uk/training/
ALT A group of smiling people are looking up at a camera and waving. You can see scientific posters and red walls behind them. The overlaid text says: Introduction to RNA-seq and functional interpretation. EMBL-EBI course | 20 – 24 February 2023. The EMBL-EBI logo is also displayed. Photo credit: Sophie Spencer, EMBL-EBI, 2023.
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Busch Lab retweeted
4 Oct 2022
Transcriptional profiling of zebrafish identifies host factors controlling susceptibility to Shigella flexneri biorxiv.org/cgi/content/shor… #bioRxiv
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Busch Lab retweeted
30 Sep 2022
👋 Thank you to all the trainers, organisers, and delegates for joining us for our last on-site course of the year! @e_m_busch, @mirloupa, @aleenamolbio, @Antonia_Nilsson, @iansealy, @richysix, @canicamxli, and many more.
➡️Join us at an event in 2023: ebi.ac.uk/training/live-even…
ALT Bioinformatics and functional genomics in zebrafish. EMBL-EBI course | 27 – 30 September 2022. A group of people look up to a camera, smile, and wave.
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Busch Lab retweeted
18 Jul 2022
Do you have a cool idea for a genetic screen in #zebrafish or are you interested in robustness during development? Get in touch to discuss this #postdoc fellowship call rea.ec.europa.eu/funding-and… @QMUL @QM_SBBS
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1 Jul 2022
If you were thinking of registering but haven't had time then we have good news - you've now got until next Friday. Come and join us as we return to the lovely Wellcome Genome Campus for four days of zebrafish bioinformatics and functional genomics.
1 Jul 2022
For one week only, we've extended the deadline for our #zebrafish course due to popular demand!
🗣️ @busch_lab, @e_m_busch, @BENsembl, @ensembl, @canicamxli, @news4go, @reactome, @ExpressionAtlas
🔗Apply by 8 July: ebi.ac.uk/training/events/bi…
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Busch Lab retweeted
1 Jul 2022
For one week only, we've extended the deadline for our #zebrafish course due to popular demand!
🗣️ @busch_lab, @e_m_busch, @BENsembl, @ensembl, @canicamxli, @news4go, @reactome, @ExpressionAtlas
🔗Apply by 8 July: ebi.ac.uk/training/events/bi…
23 Jun 2022
One week left to apply for our #bioinformatics and functional #genomics in #zebrafish course that will be held at @emblebi this September. 🦓🐟
🔗 Apply now: ebi.ac.uk/training/events/bi…
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24 Jun 2022
We couldn't be at #IZFC2022 this year, but hope to meet some #zebrafish researchers @emblebi in September. There's a week left to apply.
23 Jun 2022
One week left to apply for our #bioinformatics and functional #genomics in #zebrafish course that will be held at @emblebi this September. 🦓🐟
🔗 Apply now: ebi.ac.uk/training/events/bi…
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Busch Lab retweeted
9 May 2022
Big thanks for the ongoing support from @stevewilsonfish and @The_MRC, and to all our collaborators @fishymusings @leovaldevo @ibianco3 @NeuhaussLab @CorinneHouart @realRihellab!
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25 Mar 2022
Come and join us! Please spread the word.
25 Mar 2022
🦓🐟Applications are open!
Learn how to design functional #genomics experiments, manage and analyse #RNAseq datasets from #zebrafish, and compare results to other species.
🗣️ @e_m_busch, @iansealy, @richysix, @canicamxli & more
🔗 Apply by 1 July: ebi.ac.uk/training/events/bi…
ALT An image of a zebrafish is overlaid with the text 'Bioinformatics and functional genomics in zebrafish. 27-30 September 2022. EMBL-EBI Hinxton, United Kingdom. The EMBL-EBI logo is in the bottom right of the screen.
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8 Mar 2022
Please share this open PhD position in our lab: "Investigating the rules of paralogue interactions during embryonic development"
8 Mar 2022
We have an open PhD position, please share! Closing date 22nd March, do get in touch with any questions. qmul.ac.uk/sbbs/postgraduate…
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Busch Lab retweeted
7 Aug 2021
Super happy to have this story up @biorxivpreprint with @stevewilsonlab. Allele-specific expression can mess with your mutant #RNAseq, always check genomic location of DE genes! #zebrafish
7 Aug 2021
A red herring in zebrafish genetics: allele-specific gene expression can underlie altered transcript abundance in zebrafish mutants biorxiv.org/cgi/content/shor… #bioRxiv
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Busch Lab retweeted
7 Aug 2021
A red herring in zebrafish genetics: allele-specific gene expression can underlie altered transcript abundance in zebrafish mutants biorxiv.org/cgi/content/shor… #bioRxiv
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Busch Lab retweeted
10 Mar 2021
Thanks NIDA for the opportunity to present to the 2021 GECCRT meeting! Look for #Leggieri #Mech #Hosseinian & #Merteroglu to access our works tinyurl.com/2021GECCRT
@Dan10R3r10 @aleksandra_mech @saEdehosseinian @busch_lab
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