BioDigital Convergence
PART 26 A: CONNECTING ALL SYSTEMS TO THE HUMAN & COMPUTING THE RESPONSES TO THE QUANTUM HYBRID CLOUD
This is important because the entire BEAST SYSTEM gets connected & mapped to you using these packages.
SPACK PACKAGES
1) Simple package browsing portal.
github.com/spack/packages.sp…
This repository provides a rich search interface to currently available Spack packages.
The Metadata is updated nightly.
See the Packages!
packages.spack.io/
PACKAGES INCLUDE:
- ABySS
packages.spack.io/package.ht…
- cmake
packages.spack.io/package.ht…
- hdf5
packages.spack.io/package.ht…
- hydrogen
packages.spack.io/package.ht…
- gdal
packages.spack.io/package.ht…
- gobject-introspection
packages.spack.io/package.ht…
- flux-core
packages.spack.io/package.ht…
- flux-pmix
packages.spack.io/package.ht…
- flux-sched
packages.spack.io/package.ht…
- quantum-espresso
packages.spack.io/package.ht…
- slurm
packages.spack.io/package.ht…
- snakemake
packages.spack.io/package.ht…
- star
packages.spack.io/package.ht…
Understand the packages I listed above are only a small few in a very large selection.
Those packages tie into every aspect of the upcoming Beast System.
NOTE: There's a reason they call ot the ABySS
MAPPING, TARGETING, COMPUTING & MANIPULATION
In this Beast System they do everything at the molecular & nano level.
Here are some tools & systems designed to "Pass Information" through you while retrieving information from you.
1) SPECTRA (COMPUTING)
Sparse Eigenvalue Computation Toolkit as a Redesigned ARPACK (SPECTRA)
A header-only C library for large scale eigenvalue problems.
spectralib.org/
Spectra stands for Sparse Eigenvalue Computation Toolkit as a Redesigned ARPACK.
caam.rice.edu/software/ARPAC…
Spectra is based on the algorithm described in the ARPACK Users’ Guide, the implicitly restarted Arnoldi/Lanczos method.
li.mit.edu/Archive/Activitie…
It is a C library for large scale eigenvalue problems, built on top of Eigen, an open source linear algebra library.
Spectra is implemented as a header-only C library, whose only dependency, Eigen, is also header-only.
eigen.tuxfamily.org/
Hence Spectra can be easily embedded in C projects that require calculating eigenvalues of large matrices.
github.com/vijaysm/spectra
2) Nek5000
The open-source, highly-scalable, always-portable spectral element code.
nek5000.github.io/NekDoc/qui…
3) ENigMA (FRAMEWORK)
A multiphysics framework with robust mesh generation capabilities.
It also provides classes for robust mesh generation (triangular, block, constrained tetrahedral, etc), intersection and clipping operations and implements R-tree, octree and hashgrid methods for spatial searching.
It can be used for three-dimensional flow, thermal and structural analysis.
It was developed to be cross-platform using STL, Eigen (for vectors and matrices) and exprtk (for math expressions).
The SWIG tool is used to expose ENigMA's classes and methods to other languages such as Python, C#, etc. It also uses Gtest for unit testing (> 160 unit tests), CMake is used for cross-platform building and Git is used for source code management.
github.com/vijaysm/ENigMA