Mar 11
Splitstreeでルート付きのネットワーク系統樹ができるようになったとのこと。
PhyloFusion—Fast and Easy Fusion of Rooted Phylogenetic Trees into Rooted Phylogenetic Networks academic.oup.com/sysbio/arti… @systbiol
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今月は早水研に豪華ゲストが来ます✨生命情報学のアルゴリズム研究の世界的権威で，医学や生物学のデータ解析を支えるSplitsTreeの開発者でもあるDaniel Huson先生です！🥳実りある共同研究にしたいと思います🍎学生にとっても，学んだ教科書・論文・ソフトウェアの著者と直に話せる貴重な機会です😊
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3 Dec 2024
now try this data matrix with SplitsTree. That would be worth seeing
28 Nov 2024
A nuclear phylogenomic tree of grasses (Poaceae) recovers current classification despite gene tree incongruence
Grass Phylogeny Working Group III
📖 nph.onlinelibrary.wiley.com/…
ALT Phylogeny of 1153 Poaceae accessions inferred from 331 nuclear genes, including paralogs, using a multispecies coalescent approach.
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The SplitsTree App: interactive analysis and visualization using phylogenetic trees and networks nature.com/articles/s41592-0… (read free: rdcu.be/dSWrr) 🧬🖥️ github.com/husonlab/splitstr…
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4 Sep 2024
The SplitsTree App facilitates comprehensive, proficient and reproducible phylogenetic tree and network analysis. @HusonDaniel
nature.com/articles/s41592-0…
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4 Sep 2024
» The SplitsTree App: interactive analysis and visualization using phylogenetic trees and networks | Nature Methods nature.com/articles/s41592-0…
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3 Sep 2024
Happy to see the new splitstree paper by @HusonDaniel & David Bryant: nature.com/articles/s41592-0…
A few years ago Tara Chari and I used splitstree to analyze Senate votes in this @APSA_Preprints (the use for voting data was suggested by David Bryant): preprints.apsanet.org/engage…
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3 Sep 2024
The SplitsTree App: interactive analysis and visualization using phylogenetic trees and networks nature.com/articles/s41592-0…
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The SplitsTree App: interactive analysis and visualization using phylogenetic trees and networks | Nature Methods nature.com/articles/s41592-0…
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2 Sep 2024
The SplitsTree App: interactive analysis and visualization using phylogenetic trees and networks | Nature Methods nature.com/articles/s41592-0…
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2 Sep 2024
SplitsTree App for interactive analysis and visualization using phylogenetic trees and networks, developed by Prof @HusonDaniel and Prof David Bryant, out in @naturemethods.
doi.org/10.1038/s41592-024-0…
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25 Feb 2024
How do you create neighbornet plots with some groups highlighted/annotated like in the pictures below⬇️? I can't find any option to do that in Splitstree 4 nor in R
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18 Jan 2024
SplitsTree app is now available.
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17 May 2023
SplitsTreeでコハコベとネットワークを作らないからコハコベとの雑種という可能性は支持されない。また福岡県と宮崎県のサンプルがMIG-seq系統樹できれいにまとまる。独立に生じた雑種ならここまで一致しないだろう。しかし区別はムズカシイ。２地点でミドリハコベと区別して採集した自分をほめたい。
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16 Apr 2023
however, once your data is cognatized, you can start with a splitstree to see the degree of reticulation in your data (how tree-like it is at first glance), and apply for instance parsimony.
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9 Jan 2023
OTOH I do think that there are authors relying on algorithms like NeighborNet or SplitsTree who do not understand the underlying math, assumptions, and limitations even if this is central to their argumentation. Those authors are relying to much on stuff they don't understand.
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24 Dec 2022
SplitsTreeを40属並べると種分化のパターンがみえてきて面白いですね。何かのキーイノベーション後に放散する例や種間交雑が適応放散を生んでいる例などが見えてきます。SplitsTreeのパターンを定量的に比較してみたいのですが、当面はデータ解析より記載を優先します。
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21 Apr 2022
Anyone know of any studies that examine how missing data affects inferences of hybridization in phylogenetic network inference (e.g. SNAQ or reeMix, but not SplitsTree)?
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31 Jan 2022
making a nexus file in R (also knitr and glue pkgs) - Nexus is a file format used for various software, particularly in bioinformatics. It is for example used by MrBayes, SplitsTree and more. Truth be told, it’s a bit of a higgledy-piggledy... tmblr.co/ZnYBGXbTiOJPWm00
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