need destin to still prioritize sc2/scverse tho im not even sorry im selfish as fuck when it comes to shangchi 😭😭

scverse: Foundational tools for omics data in the life sciences scverse.org/

ATLAS: a scverse-compatible package for multi-omic single-cell trajectory inference integration biorxiv.org/content/10.64898…

scverse conference 2026 will take place in Copenhagen, October 12–14. ✨ Three days of all-things-single-cell and open-source tooling and community in real life. More details soon but for now, mark your calendars. scverse.org/conference2026/ See you in Copenhagen 🇩🇰

⚠️  Important updates on our upcoming Berlin hackathon incoming!⚠️ 🎨  We're sharpening the focus: this event is now called "scverse x cellpainting 2026". More information in 🧵

Technical talks on engineering challenges with AI and single-cell data in Mission Bay, SF, next Thursday. Material covering emerging analysis methods for new kits, benchmarks and evaluations for frontier models, and practical AI for drug screening. Harihara Muralidharan — Technical Staff @ LatchBio Valentine Svensson — Principal Computational Biology Scientist @ Tahoe Therapeutics Mikaela Koutrouli — Core Developer @ scverse Zhen Yang — Technical Staff @ LatchBio Link below:

🔬 Ready to bridge morphological profiling and single-cell biology with scverse? Join us in Berlin!

Two inspiring days in Berlin just wrapped up with our scverse hackathon on single-cell and spatial proteomics and it’s hard not to feel energized by what this community can do together.

LazySlide combines scverse with foundation models for efficient whole-slide image analysis. nature.com/articles/s41592-0…

Excited to share new preprint with NVIDIA on GPU-accelerated single-cell analysis 🚀 rapids-singlecell brings native GPU support to scverse/AnnData: hours → seconds (1M cells: ~52m → ~25s), scaling to 100M cells. Huge thanks to Severin Dicks 🙌 📄 arxiv.org/abs/2603.02402

SpatioTemporal Omics eneRgIES STORIES: learning Waddington differentiation potential (FGW loss) from #SpatialTranscriptomics (across time points) using Optimal Transport Tunable weights of spatial information Compute both pseudotime & velocity equivalents In Python Scverse vs PRESCIENT, based on Wasserstein distance Laura Cantini lab @naturemethods 2025 nature.com/articles/s41592-0…

Rapids-singlecell integrates into the scverse ecosystem and operates directly on the AnnData data structure, a community standard. Built on the NVIDIA and scverse ecosystems, rapids-singlecell accelerates single-cell workflows by up to several orders of magnitude.

I am one hop removed, as they have committed to API credits for our specific, scverse affiliates rewrite project ;P. However, I’ve not personally been in contact with them and, after about 3 weeks of Claude Code Max, am convinced it would be a *huge* win for our lab. 1/2

pyUCell, a native Python implementation designed for seamless integration into common single-cell analysis ecosystems such as Scanpy and scverse.

pyUCell, a native Python implementation designed for seamless integration into common single-cell analysis ecosystems such as Scanpy and scverse.

Our next seminar will feature Danila Bredikhin, PhD, presenting "Building scverse: an open-source ecosystem for single-cell multimodal omics"! 📍CoDa E160 | 1/20 2:30pm | Stanford Zoom

It’s finally time to welcome someone new into our mission. We’re hiring a Community Manager to help shape and support the growing scverse ecosystem. This is a position we’ve been looking forward to and I couldn’t be more excited to pass this opportunity on to someone new.

We’re looking for a Community Manager to help shape and support the growing scverse ecosystem. Deadline January 10, 2026! More details here: jobs.helmholtz-muenchen.de/j…

We will have our final community meeting of 2026 on Tuesday, 2025-12-09 at 11:00 CST/ 9:00 PST! Mikaela Koutrouli (@MKoutrouli) will wrap up a great year of meetings by giving an update on the state of scverse! Zoom registration link for the meeting: lnkd.in/dZpbKKsY

We wrapped up an inspiring week with a visit to NVIDIA headquarters right after the scverse conference. Huge thanks to the @NVIDIAHealth team and Severin Dicks for hosting us and for the great discussions on scaling single-cell analysis and accelerating open science ⚡️